Ultrahigh-Throughput Enzyme Engineering and Discovery in In Vitro Compartments

M Gantz, S Neun, EJ Medcalf, LD van Vliet… - Chemical …, 2023 - ACS Publications
Novel and improved biocatalysts are increasingly sourced from libraries via experimental
screening. The success of such campaigns is crucially dependent on the number of …

Methods for the directed evolution of proteins

MS Packer, DR Liu - Nature Reviews Genetics, 2015 - nature.com
Directed evolution has proved to be an effective strategy for improving or altering the activity
of biomolecules for industrial, research and therapeutic applications. The evolution of …

Diversity, versatility and complexity of bacterial gene regulation mechanisms: opportunities and drawbacks for applications in synthetic biology

I Bervoets, D Charlier - FEMS microbiology reviews, 2019 - academic.oup.com
Gene expression occurs in two essential steps: transcription and translation. In bacteria, the
two processes are tightly coupled in time and space, and highly regulated. Tight regulation …

Phage-based applications in synthetic biology

S Lemire, KM Yehl, TK Lu - Annual review of virology, 2018 - annualreviews.org
Bacteriophage research has been instrumental to advancing many fields of biology, such as
genetics, molecular biology, and synthetic biology. Many phage-derived technologies have …

A portable expression resource for engineering cross-species genetic circuits and pathways

M Kushwaha, HM Salis - Nature communications, 2015 - nature.com
Genetic circuits and metabolic pathways can be reengineered to allow organisms to process
signals and manufacture useful chemicals. However, their functions currently rely on …

Entropy-driven assisted T7 RNA polymerase amplification-activated CRISPR/Cas13a activity for SARS-CoV-2 detection in human pharyngeal swabs and environment …

J Wei, Z Song, J Cui, Y Gong, Q Tang, K Zhang… - Journal of Hazardous …, 2023 - Elsevier
In this study, we introduce an electrochemiluminescence (ECL) sensing platform based on
the" Entropy-driven triggered T7 amplification-CRISPR/Cas13a system"(EDT-Cas). This …

Towards an engineering theory of evolution

SD Castle, CS Grierson, TE Gorochowski - Nature Communications, 2021 - nature.com
Biological technologies are fundamentally unlike any other because biology evolves.
Bioengineering therefore requires novel design methodologies with evolution at their core …

A sigma factor toolbox for orthogonal gene expression in Escherichia coli

I Bervoets, M Van Brempt, K Van Nerom… - Nucleic acids …, 2018 - academic.oup.com
Synthetic genetic sensors and circuits enable programmable control over timing and
conditions of gene expression and, as a result, are increasingly incorporated into the control …

Synthetic evolution

AJ Simon, S d'Oelsnitz, AD Ellington - Nature Biotechnology, 2019 - nature.com
The combination of modern biotechnologies such as DNA synthesis, λ red recombineering,
CRISPR-based editing and next-generation high-throughput sequencing increasingly …

Synthetic biological circuits within an orthogonal central dogma

A Costello, AH Badran - Trends in biotechnology, 2021 - cell.com
Synthetic biology strives to reliably control cellular behavior, typically in the form of user-
designed interactions of biological components to produce a predetermined output …