[HTML][HTML] Microsatellite markers: what they mean and why they are so useful

MLC Vieira, L Santini, AL Diniz… - Genetics and molecular …, 2016 - SciELO Brasil
Abstract Microsatellites or Single Sequence Repeats (SSRs) are extensively employed in
plant genetics studies, using both low and high throughput genotyping approaches …

Mining and development of novel SSR markers using next generation sequencing (NGS) data in plants

S Taheri, T Lee Abdullah, MR Yusop, MM Hanafi… - Molecules, 2018 - mdpi.com
Microsatellites, or simple sequence repeats (SSRs), are one of the most informative and
multi-purpose genetic markers exploited in plant functional genomics. However, the …

Genotyping-by-sequencing in plants

S Deschamps, V Llaca, GD May - Biology, 2012 - mdpi.com
The advent of next-generation DNA sequencing (NGS) technologies has led to the
development of rapid genome-wide Single Nucleotide Polymorphism (SNP) detection …

Applications of next‐generation sequencing in plant biology

AN Egan, J Schlueter… - American journal of …, 2012 - Wiley Online Library
The last several years have seen revolutionary advances in DNA sequencing technologies
with the advent of next‐generation sequencing (NGS) techniques. NGS methods now allow …

The report of my death was an exaggeration: a review for researchers using microsatellites in the 21st century

RGJ Hodel, MC Segovia‐Salcedo… - Applications in plant …, 2016 - Wiley Online Library
Microsatellites, or simple sequence repeats (SSRs), have long played a major role in
genetic studies due to their typically high polymorphism. They have diverse applications …

Using nuclear gene data for plant phylogenetics: Progress and prospects II. Next‐gen approaches

EA Zimmer, J Wen - Journal of Systematics and Evolution, 2015 - Wiley Online Library
Single and low copy nuclear genes offer a larger number of, and more rapidly evolving,
characters than the chloroplast and nuclear ribosomal gene sequences that have dominated …

Genome-wide simple sequence repeats (SSR) markers discovered from whole-genome sequence comparisons of multiple spinach accessions

G Bhattarai, A Shi, DR Kandel, N Solís-Gracia… - Scientific reports, 2021 - nature.com
The availability of well-assembled genome sequences and reduced sequencing costs have
enabled the resequencing of many additional accessions in several crops, thus facilitating …

Chloroplast genome analyses and genomic resource development for epilithic sister genera Oresitrophe and Mukdenia (Saxifragaceae), using genome skimming …

L Liu, Y Wang, P He, P Li, J Lee, DE Soltis, C Fu - BMC genomics, 2018 - Springer
Abstract Background Epilithic sister genera Oresitrophe and Mukdenia (Saxifragaceae)
have an epilithic habitat (rocky slopes) and a parapatric distribution in East Asia, which …

DNA fingerprinting in botany: past, present, future

H Nybom, K Weising, B Rotter - Investigative genetics, 2014 - Springer
Almost three decades ago Alec Jeffreys published his seminal Nature papers on the use of
minisatellite probes for DNA fingerprinting of humans (Jeffreys and colleagues Nature 1985 …

Assessment of the genetic diversity in forest tree populations using molecular markers

I Porth, YA El-Kassaby - Diversity, 2014 - mdpi.com
Molecular markers have proven to be invaluable tools for assessing plants' genetic
resources by improving our understanding with regards to the distribution and the extent of …