Walking a tightrope: the complex balancing act of R-loops in genome stability

JR Brickner, JL Garzon, KA Cimprich - Molecular cell, 2022 - cell.com
Although transcription is an essential cellular process, it is paradoxically also a well-
recognized cause of genomic instability. R-loops, non-B DNA structures formed when …

R-loops as cellular regulators and genomic threats

MP Crossley, M Bocek, KA Cimprich - Molecular cell, 2019 - cell.com
During transcription, the nascent RNA strand can base pair with its template DNA, displacing
the non-template strand as ssDNA and forming a structure called an R-loop. R-loops are …

[HTML][HTML] R loops: from physiological to pathological roles

T García-Muse, A Aguilera - Cell, 2019 - cell.com
DNA-RNA hybrids play a physiological role in cellular processes, but often, they represent
non-scheduled co-transcriptional structures with a negative impact on transcription …

Mechanisms of oncogene-induced replication stress: jigsaw falling into place

P Kotsantis, E Petermann, SJ Boulton - Cancer discovery, 2018 - AACR
Oncogene activation disturbs cellular processes and accommodates a complex landscape
of changes in the genome that contribute to genomic instability, which accelerates mutation …

Senataxin resolves RNA: DNA hybrids forming at DNA double-strand breaks to prevent translocations

S Cohen, N Puget, YL Lin, T Clouaire… - Nature …, 2018 - nature.com
Ataxia with oculomotor apraxia 2 (AOA-2) and amyotrophic lateral sclerosis (ALS4) are
neurological disorders caused by mutations in the gene encoding for senataxin (SETX), a …

Transcription-mediated replication hindrance: a major driver of genome instability

B Gómez-González, A Aguilera - Genes & development, 2019 - genesdev.cshlp.org
Genome replication involves dealing with obstacles that can result from DNA damage but
also from chromatin alterations, topological stress, tightly bound proteins or non-B DNA …

Histone modifications and non-coding RNAs: mutual epigenetic regulation and role in pathogenesis

IV Bure, MV Nemtsova, EB Kuznetsova - International Journal of …, 2022 - mdpi.com
In the last few years, more and more scientists have suggested and confirmed that
epigenetic regulators are tightly connected and form a comprehensive network of regulatory …

The chromatin network helps prevent cancer-associated mutagenesis at transcription-replication conflicts

A Bayona-Feliu, E Herrera-Moyano… - Nature …, 2023 - nature.com
Genome instability is a feature of cancer cells, transcription being an important source of
DNA damage. This is in large part associated with R-loops, which hamper replication …

RNA biogenesis and RNA metabolism factors as R-loop suppressors: a hidden role in genome integrity

R Luna, B Gómez-González… - Genes & …, 2024 - genesdev.cshlp.org
Genome integrity relies on the accuracy of DNA metabolism, but as appreciated for more
than four decades, transcription enhances mutation and recombination frequencies. More …

DHX9 helicase promotes R-loop formation in cells with impaired RNA splicing

P Chakraborty, JTJ Huang, K Hiom - Nature communications, 2018 - nature.com
R-loops are stable nucleic acid structures that have important physiological functions, but
which also pose a significant threat to genomic stability. Increased R-loops cause replication …