Protein design: From the aspect of water solubility and stability

R Qing, S Hao, E Smorodina, D Jin, A Zalevsky… - Chemical …, 2022 - ACS Publications
Water solubility and structural stability are key merits for proteins defined by the primary
sequence and 3D-conformation. Their manipulation represents important aspects of the …

De novo metalloprotein design

MJ Chalkley, SI Mann, WF DeGrado - Nature Reviews Chemistry, 2022 - nature.com
Natural metalloproteins perform many functions—ranging from sensing to electron transfer
and catalysis—in which the position and property of each ligand and metal are dictated by …

De novo protein design, a retrospective

IV Korendovych, WF DeGrado - Quarterly reviews of biophysics, 2020 - cambridge.org
Proteins are molecular machines whose function depends on their ability to achieve
complex folds with precisely defined structural and dynamic properties. The rational design …

Catalysis and Electron Transfer in De Novo Designed Metalloproteins

KJ Koebke, TBJ Pinter, WC Pitts, VL Pecoraro - Chemical reviews, 2022 - ACS Publications
One of the hallmark advances in our understanding of metalloprotein function is showcased
in our ability to design new, non-native, catalytically active protein scaffolds. This review …

Protein design: toward functional metalloenzymes

F Yu, VM Cangelosi, ML Zastrow, M Tegoni… - Chemical …, 2014 - ACS Publications
Protein design is a valuable tool for understanding the fundamental factors that dictate
protein structure and function. The field of protein design has seen significant progress over …

Synthetic models for non-heme carboxylate-bridged diiron metalloproteins: strategies and tactics

EY Tshuva, SJ Lippard - Chemical reviews, 2004 - ACS Publications
Metalloproteins perform a variety of functions in biological systems. The catalysis of several
remarkable chemical transformations occurs at metal centers embedded in the active sites of …

De novo design of four-helix bundle metalloproteins: One scaffold, diverse reactivities

A Lombardi, F Pirro, O Maglio, M Chino… - Accounts of chemical …, 2019 - ACS Publications
Conspectus De novo protein design represents an attractive approach for testing and
extending our understanding of metalloprotein structure and function. Here, we describe our …

Designing artificial enzymes by intuition and computation

V Nanda, RL Koder - Nature chemistry, 2010 - nature.com
The rational design of artificial enzymes, either by applying physico–chemical intuition of
protein structure and function or with the aid of computational methods, is a promising area …

Design and engineering of artificial oxygen-activating metalloenzymes

F Nastri, M Chino, O Maglio… - Chemical Society …, 2016 - pubs.rsc.org
Many efforts are being made in the design and engineering of metalloenzymes with catalytic
properties fulfilling the needs of practical applications. Progress in this field has recently …

De novo design of catalytic proteins

J Kaplan, WF DeGrado - Proceedings of the National …, 2004 - National Acad Sciences
The de novo design of catalytic proteins provides a stringent test of our understanding of
enzyme function, while simultaneously laying the groundwork for the design of novel …