Connections in complex networks are inherently fluctuating over time and exhibit more
dimensionality than analysis based on standard static graph measures can capture. Here …

Living organisms are robust to a great variety of genetic changes. Gene regulation networks
and metabolic pathways self-organize and reaccommodate to make the organism perform …

We investigate a very simple model describing the evolution of protein-protein interaction
networks via duplication and divergence. The model exhibits a remarkably rich behavior …

Background Cellular functions are accomplished by the concerted actions of functional
modules. The mechanisms driving the emergence and evolution of these modules are still …

Genomic duplication-divergence processes are the primary source of new protein functions
and thereby contribute to the evolutionary expansion of functional molecular networks. Yet, it …

Background Successive whole genome duplications have recently been firmly established
in all major eukaryote kingdoms. Such exponential evolutionary processes must have …

In the 1940s and 1950s, biology was transformed by physicists and physical chemists, who
employed simple yet powerful concepts and engaged the powers of genetics to infer …

A common feature of biological networks is the geometrical property of self-similarity.
Molecular regulatory networks through to circulatory systems, nervous systems, social …

Background Much work in systems biology, but also in the analysis of social network and
communication and transport infrastructure, involves an in-depth analysis of local and global …

We continue building up the information theory of non-sequential data structures such as
trees, sets, and graphs. In this paper, we consider dynamic graphs generated by a full …