RNA modifications in cancer

Q Tang, L Li, Y Wang, P Wu, X Hou, J Ouyang… - British Journal of …, 2023 - nature.com
Currently, more than 170 modifications have been identified on RNA. Among these RNA
modifications, various methylations account for two-thirds of total cases and exist on almost …

[HTML][HTML] The role of RNA m5C modification in cancer metastasis

Q Zhang, F Liu, W Chen, H Miao, H Liang… - … journal of biological …, 2021 - ncbi.nlm.nih.gov
Epigenetic modification plays a crucial regulatory role in the biological processes of
eukaryotic cells. The recent characterization of DNA and RNA methylation is still ongoing …

DirectRMDB: a database of post-transcriptional RNA modifications unveiled from direct RNA sequencing technology

Y Zhang, J Jiang, J Ma, Z Wei, Y Wang… - Nucleic acids …, 2023 - academic.oup.com
With advanced technologies to map RNA modifications, our understanding of them has
been revolutionized, and they are seen to be far more widespread and important than …

RM2Target: a comprehensive database for targets of writers, erasers and readers of RNA modifications

X Bao, Y Zhang, H Li, Y Teng, L Ma… - Nucleic Acids …, 2023 - academic.oup.com
RNA modification is a dynamic and reversible process regulated by a series of writers,
erasers and readers (WERs). Abnormal changes of WERs will disrupt the RNA modification …

The 2022 Nucleic Acids Research database issue and the online molecular biology database collection

DJ Rigden, XM Fernández - Nucleic acids research, 2022 - academic.oup.com
Abstract The 2022 Nucleic Acids Research Database Issue contains 185 papers, including
87 papers reporting on new databases and 85 updates from resources previously published …

m6A-Atlas v2.0: updated resources for unraveling the N6-methyladenosine (m6A) epitranscriptome among multiple species

Z Liang, H Ye, J Ma, Z Wei, Y Wang… - Nucleic Acids …, 2024 - academic.oup.com
Abstract N 6-Methyladenosine (m6A) is one of the most abundant internal chemical
modifications on eukaryote mRNA and is involved in numerous essential molecular …

m5C-Atlas: a comprehensive database for decoding and annotating the 5-methylcytosine (m5C) epitranscriptome

J Ma, B Song, Z Wei, D Huang, Y Zhang… - Nucleic acids …, 2022 - academic.oup.com
Methylcytosine (m5C) is one of the most prevalent covalent modifications on RNA. It is
known to regulate a broad variety of RNA functions, including nuclear export, RNA stability …

[HTML][HTML] m7GHub V2.0: an updated database for decoding the N7-methylguanosine (m7G) epitranscriptome

X Wang, Y Zhang, K Chen, Z Liang, J Ma… - Nucleic Acids …, 2024 - academic.oup.com
With recent progress in mapping N7-methylguanosine (m7G) RNA methylation sites, tens of
thousands of experimentally validated m7G sites have been discovered in various species …

[HTML][HTML] CircRHBDD1 augments metabolic rewiring and restricts immunotherapy efficacy via m6A modification in hepatocellular carcinoma

J Cai, Z Chen, Y Zhang, J Wang, Z Zhang, J Wu… - Molecular Therapy …, 2022 - cell.com
Circular RNAs are a class of highly conserved RNAs with stable covalently closed circular
structures. Metabolic reprogramming of cancer cells reshapes the tumor microenvironment …

RMDisease V2. 0: an updated database of genetic variants that affect RNA modifications with disease and trait implication

B Song, X Wang, Z Liang, J Ma, D Huang… - Nucleic Acids …, 2023 - academic.oup.com
Recent advances in epitranscriptomics have unveiled functional associations between RNA
modifications (RMs) and multiple human diseases, but distinguishing the functional or …