[PDF][PDF] Recent developments in the CCP-EM software suite

T Burnley, CM Palmer, M Winn - Acta Crystallographica Section D …, 2017 - journals.iucr.org
As part of its remit to provide computational support to the cryo-EM community, the
Collaborative Computational Project for Electron cryo-Microscopy (CCP-EM) has produced …

Impact of cytosine methylation on DNA binding specificities of human transcription factors

Y Yin, E Morgunova, A Jolma, E Kaasinen, B Sahu… - Science, 2017 - science.org
INTRODUCTION Nearly all cells in the human body share the same primary genome
sequence consisting of four nucleotide bases. One of the bases, cytosine, is commonly …

Molecular replacement with MOLREP

A Vagin, A Teplyakov - Acta Crystallographica Section D: Biological …, 2010 - journals.iucr.org
MOLREP is an automated program for molecular replacement that utilizes a number of
original approaches to rotational and translational search and data preparation. Since the …

Structural basis for SARM1 inhibition and activation under energetic stress

M Sporny, J Guez-Haddad, T Khazma, A Yaron… - Elife, 2020 - elifesciences.org
SARM1, an executor of axonal degeneration, displays NADase activity that depletes the key
cellular metabolite, NAD+, in response to nerve injury. The basis of SARM1 inhibition and its …

A molecular mechanism for direct sirtuin activation by resveratrol

M Gertz, GTT Nguyen, F Fischer, B Suenkel… - PloS one, 2012 - journals.plos.org
Sirtuins are protein deacetylases regulating metabolism, stress responses, and aging
processes, and they were suggested to mediate the lifespan extending effect of a low calorie …

Ex-527 inhibits Sirtuins by exploiting their unique NAD+-dependent deacetylation mechanism

M Gertz, F Fischer, GTT Nguyen… - Proceedings of the …, 2013 - National Acad Sciences
Sirtuins are protein deacetylases regulating metabolism and stress responses. The seven
human Sirtuins (Sirt1–7) are attractive drug targets, but Sirtuin inhibition mechanisms are …

Selective inhibitors of the FK506-binding protein 51 by induced fit

S Gaali, A Kirschner, S Cuboni, J Hartmann… - Nature chemical …, 2015 - nature.com
Abstract The FK506-binding protein 51 (FKBP51, encoded by the FKBP5 gene) is an
established risk factor for stress-related psychiatric disorders such as major depression …

Structural basis of androgen receptor binding to selective androgen response elements

PL Shaffer, A Jivan, DE Dollins… - Proceedings of the …, 2004 - National Acad Sciences
Steroid receptors bind as dimers to a degenerate set of response elements containing
inverted repeats of a hexameric half-site separated by 3 bp of spacer (IR3). Naturally …

[HTML][HTML] A large-scale conformational change couples membrane recruitment to cargo binding in the AP2 clathrin adaptor complex

LP Jackson, BT Kelly, AJ McCoy, T Gaffry, LC James… - Cell, 2010 - cell.com
The AP2 adaptor complex (α, β2, σ2, and μ2 subunits) crosslinks the endocytic clathrin
scaffold to PtdIns4, 5P 2-containing membranes and transmembrane protein cargo. In the" …

CryoEM reveals that ribosomes in microsporidian spores are locked in a dimeric hibernating state

M McLaren, R Conners, MN Isupov, P Gil-Díez… - Nature …, 2023 - nature.com
Translational control is an essential process for the cell to adapt to varying physiological or
environmental conditions. To survive adverse conditions such as low nutrient levels …