Deep intronic mutations and human disease

R Vaz-Drago, N Custódio, M Carmo-Fonseca - Human genetics, 2017 - Springer
Next-generation sequencing has revolutionized clinical diagnostic testing. Yet, for a
substantial proportion of patients, sequence information restricted to exons and exon–intron …

Hereditary breast and ovarian cancer: new genes in confined pathways

FC Nielsen, T van Overeem Hansen… - Nature Reviews …, 2016 - nature.com
Genetic abnormalities in the DNA repair genes BRCA1 and BRCA2 predispose to hereditary
breast and ovarian cancer (HBOC). However, only approximately 25% of cases of HBOC …

The role of exome sequencing in newborn screening for inborn errors of metabolism

AN Adhikari, RC Gallagher, Y Wang, RJ Currier… - Nature medicine, 2020 - nature.com
Public health newborn screening (NBS) programs provide population-scale ascertainment
of rare, treatable conditions that require urgent intervention. Tandem mass spectrometry …

In silico prediction of splice-altering single nucleotide variants in the human genome

X Jian, E Boerwinkle, X Liu - Nucleic acids research, 2014 - academic.oup.com
In silico tools have been developed to predict variants that may have an impact on pre-
mRNA splicing. The major limitation of the application of these tools to basic research and …

Pre-mRNA splicing in disease and therapeutics

RK Singh, TA Cooper - Trends in molecular medicine, 2012 - cell.com
In metazoans, alternative splicing of genes is essential for regulating gene expression and
contributing to functional complexity. Computational predictions, comparative genomics, and …

Pathogenic variants that alter protein code often disrupt splicing

R Soemedi, KJ Cygan, CL Rhine, J Wang, C Bulacan… - Nature …, 2017 - nature.com
The lack of tools to identify causative variants from sequencing data greatly limits the
promise of precision medicine. Previous studies suggest that one-third of disease …

Using positional distribution to identify splicing elements and predict pre-mRNA processing defects in human genes

KH Lim, L Ferraris, ME Filloux… - Proceedings of the …, 2011 - National Acad Sciences
We present an intuitive strategy for predicting the effect of sequence variation on splicing. In
contrast to transcriptional elements, splicing elements appear to be strongly position …

Exonic Splicing Mutations Are More Prevalent than Currently Estimated and Can Be Predicted by Using In Silico Tools

O Soukarieh, P Gaildrat, M Hamieh, A Drouet… - PLoS …, 2016 - journals.plos.org
The identification of a causal mutation is essential for molecular diagnosis and clinical
management of many genetic disorders. However, even if next-generation exome …

The Human Gene Mutation Database (HGMD) and its exploitation in the fields of personalized genomics and molecular evolution

PD Stenson, EV Ball, M Mort, AD Phillips… - Current protocols in …, 2012 - Wiley Online Library
Abstract The Human Gene Mutation Database (HGMD) constitutes a comprehensive core
collection of data on germ‐line mutations in nuclear genes underlying or associated with …

New connections between splicing and human disease

RA Padgett - Trends in Genetics, 2012 - cell.com
The removal by splicing of introns from the primary transcripts of most mammalian genes is
an essential step in gene expression. Splicing is performed by large, complex …