Lamin B receptor: multi-tasking at the nuclear envelope

AL Olins, G Rhodes, DBM Welch, M Zwerger, DE Olins - Nucleus, 2010 - Taylor & Francis
Lamin B Receptor (LBR) is an integral membrane protein of the interphase nuclear
envelope (NE). The N-terminal end resides in the nucleoplasm, binding to lamin B and …

[PDF][PDF] Update 1 of: computational modeling approaches to structure–function analysis of G protein-coupled receptors

F Fanelli, PG De Benedetti - Chemical Reviews-Columbus, 2011 - researchgate.net
Any aspect of cell activity is regulated by extracellular signals that are recognized, decoded,
and transduced inside the cell via different classes of plasma membrane receptors. 1À3 G …

[HTML][HTML] EM-fold: De novo folding of α-helical proteins guided by intermediate-resolution electron microscopy density maps

S Lindert, R Staritzbichler, N Wötzel, M Karakaş… - Structure, 2009 - cell.com
Summary In medium-resolution (7–10 Å) cryo-electron microscopy (cryo-EM) density maps,
α helices can be identified as density rods whereas β-strand or loop regions are not as …

Evolutionary bidirectional expansion for the tracing of alpha helices in cryo-electron microscopy reconstructions

M Rusu, W Wriggers - Journal of structural biology, 2012 - Elsevier
Cryo-electron microscopy (cryo-EM) enables the imaging of macromolecular complexes in
near-native environments at resolutions that often permit the visualization of secondary …

Hybrid approaches: applying computational methods in cryo-electron microscopy

S Lindert, PL Stewart, J Meiler - Current opinion in structural biology, 2009 - Elsevier
Recent advances in cryo-electron microscopy have led to an increasing number of high (3–
5Å) to medium (5–10Å) resolution cryoEM density maps. These density maps contain …

Blind testing of cross‐linking/mass spectrometry hybrid methods in CASP11

M Schneider, A Belsom, J Rappsilber… - Proteins: Structure …, 2016 - Wiley Online Library
Hybrid approaches combine computational methods with experimental data. The
information contained in the experimental data can be leveraged to probe the structure of …

Structural determinants of transmembrane helical proteins

SE Harrington, N Ben-Tal - Structure, 2009 - cell.com
We identify a structural feature of transmembrane helical proteins that restricts their
conformational space and suggests a new way of understanding the construction and …

Structural modeling from electron microscopy data

JR López‐Blanco, P Chacón - Wiley Interdisciplinary Reviews …, 2015 - Wiley Online Library
Cryo‐electron microscopy is a powerful technique for the determination of three‐
dimensional (3D) structures of macromolecular machines, as it provides functional …

[HTML][HTML] Structural refinement of membrane proteins by restrained molecular dynamics and solvent accessibility data

P Sompornpisut, B Roux, E Perozo - Biophysical journal, 2008 - cell.com
We present an approach for incorporating solvent accessibility data from electron
paramagnetic resonance experiments in the structural refinement of membrane proteins …

Structural, dynamic, and functional aspects of helix association in membranes: a computational view

AA Polyansky, PE Volynsky, RG Efremov - Advances in protein chemistry …, 2011 - Elsevier
This review surveys recent achievements of molecular computer modeling in understanding
spatial structure, dynamics, and mechanisms of functioning of transmembrane α-helical …