N Zhang, MR Li, FS Zhang - Chemical Physics Letters, 2019 - Elsevier
Molecular dynamics simulations are performed for mixtures of ethylene glycol (EG) and water with EG mass fraction of C i= 0%, 20%, 40%, 60%, 80%, 100%. The extensively …
S Mukherjee, D Bhattacharyya - Journal of Biomolecular Structure …, 2013 - Taylor & Francis
A large amount of experimental evidence is available on the effect of magnesium ions on the structure and stability of DNA double helix. Less is known, however, on how these ions affect …
PK Pingali, S Halder, D Mukherjee, S Basu… - Journal of computer …, 2014 - Springer
RNA contains different secondary structural motifs like pseudo-helices, hairpin loops, internal loops, etc. in addition to anti-parallel double helices and random coils. The …
S Kundu, S Mukherjee, D Bhattacharyya - Journal of biosciences, 2012 - Springer
The three-dimensional structure of DNA contains various sequence-dependent structural information, which control many cellular processes in life, such as replication, transcription …
S Halder, D Bhattacharyya - The Journal of Physical Chemistry B, 2010 - ACS Publications
Noncanonical basepairs have gained importance over the past few years because of their various functions in RNA biochemistry. These basepairs appear quite frequently in different …
L Maganti, D Bhattacharyya - Journal of computer-aided molecular design, 2020 - Springer
DNA is an essential target for the treatment of various pathologies, especially cancer. Hence targeting DNA double helix for alteration of its function has been attempted by several ways …
Understanding dinucleotide sequence directed structures of nuleic acids and their variability from experimental observation remained ineffective due to unavailability of statistically …
M Mogheiseh, RH Ghasemi - Molecular Biotechnology, 2023 - Springer
The present article aims to investigate the ability of a DNA origami nanocarrier to successfully capture a cargo using molecular dynamics (MD) simulation. In addition, the …
S Halder, D Bhattacharyya - The Journal of Physical Chemistry B, 2012 - ACS Publications
Internal loops within RNA duplex regions are formed by single or tandem basepairing mismatches with flanking canonical Watson–Crick basepairs on both sides. They are the …