Life and death in the soil microbiome: how ecological processes influence biogeochemistry

NW Sokol, E Slessarev, GL Marschmann… - Nature Reviews …, 2022 - nature.com
Soil microorganisms shape global element cycles in life and death. Living soil
microorganisms are a major engine of terrestrial biogeochemistry, driving the turnover of soil …

Phage therapy in the postantibiotic era

FL Gordillo Altamirano, JJ Barr - Clinical microbiology reviews, 2019 - Am Soc Microbiol
Antibiotic resistance is arguably the biggest current threat to global health. An increasing
number of infections are becoming harder or almost impossible to treat, carrying high …

A quantitative framework reveals ecological drivers of grassland microbial community assembly in response to warming

D Ning, M Yuan, L Wu, Y Zhang, X Guo, X Zhou… - Nature …, 2020 - nature.com
Unraveling the drivers controlling community assembly is a central issue in ecology.
Although it is generally accepted that selection, dispersal, diversification and drift are major …

Inter-bacterial mutualism promoted by public goods in a system characterized by deterministic temperature variation

Y Zhao, Z Liu, B Zhang, J Cai, X Yao, M Zhang… - Nature …, 2023 - nature.com
Mutualism is commonly observed in nature but not often reported for bacterial communities.
Although abiotic stress is thought to promote microbial mutualism, there is a paucity of …

Life history strategies of soil bacterial communities across global terrestrial biomes

G Piton, SD Allison, M Bahram, F Hildebrand… - Nature …, 2023 - nature.com
The life history strategies of soil microbes determine their metabolic potential and their
response to environmental changes. Yet these strategies remain poorly understood. Here …

Function and functional redundancy in microbial systems

S Louca, MF Polz, F Mazel, MBN Albright… - Nature ecology & …, 2018 - nature.com
Microbial communities often exhibit incredible taxonomic diversity, raising questions
regarding the mechanisms enabling species coexistence and the role of this diversity in …

A comprehensive evaluation of microbial differential abundance analysis methods: current status and potential solutions

L Yang, J Chen - Microbiome, 2022 - Springer
Background Differential abundance analysis (DAA) is one central statistical task in
microbiome data analysis. A robust and powerful DAA tool can help identify highly confident …

Abundant fungi adapt to broader environmental gradients than rare fungi in agricultural fields

S Jiao, Y Lu - Global Change Biology, 2020 - Wiley Online Library
Soil communities are intricately linked to ecosystem functioning, and a predictive
understanding of how communities assemble in response to environmental change is of …

Stochastic community assembly: does it matter in microbial ecology?

J Zhou, D Ning - Microbiology and molecular biology reviews, 2017 - Am Soc Microbiol
Understanding the mechanisms controlling community diversity, functions, succession, and
biogeography is a central, but poorly understood, topic in ecology, particularly in microbial …

[图书][B] Environmental DNA: For biodiversity research and monitoring

P Taberlet, A Bonin, L Zinger, E Coissac - 2018 - books.google.com
Environmental DNA (eDNA) refers to DNA that can be extracted from environmental
samples (such as soil, water, feces, or air) without the prior isolation of any target organism …