Protein–protein interactions (PPIs) are involved at all levels of cellular organization, thus
making the development of PPI inhibitors extremely valuable. The identification of selective …

▪ Abstract Comparative modeling predicts the three-dimensional structure of a given protein
sequence (target) based primarily on its alignment to one or more proteins of known …

Comparative protein structure modeling predicts the three‐dimensional structure of a given
protein sequence (target) based primarily on its alignment to one or more proteins of known …

The application of all‐atom force fields (and explicit or implicit solvent models) to protein
homology‐modeling tasks such as side‐chain and loop prediction remains challenging both …

Comparative protein structure prediction is limited mostly by the errors in alignment and loop
modeling. We describe here a new automated modeling technique that significantly …

ModLoop is a web server for automated modeling of loops in protein structures. The input is
the atomic coordinates of the protein structure in the Protein Data Bank format, and the …

The Ramachandran plot is among the most central concepts in structural biology, seen in
publications and textbooks alike. However, with the increasing numbers of known protein …

Helix‐capping motifs are specific patterns of hydrogen bonding and hydrophobic
interactions found at or near the ends of helices in both proteins and peptides. In an α‐helix …

The inhibition of protein–protein interactions is a growing strategy in drug development. In
addition to structured regions, many protein loop regions are involved in protein–protein …

Fourteen models were constructed and analyzed for the comparative modeling section of
Critical Assessment of Techniques for Protein Structure Prediction (CASP4). Sequence …