Hammerhead ribozyme kinetics

TK Stage-Zimmermann, OC Uhlenbeck - Rna, 1998 - cambridge.org
The hammerhead ribozyme is a small RNA motif that self cleaves at a specific
phosphodiester bond to produce 2′, 3′ cyclic phosphate and 5′ hydroxyl termini …

Hammerhead ribozyme design and application

M Amarzguioui, H Prydz - Cellular and Molecular Life Sciences CMLS, 1998 - Springer
The emerging knowledge about RNA-based enzymes has already had great impact on our
concept of evolutionary history, making the 'RNA world'more likely. It may well have an …

A two-metal ion mechanism operates in the hammerhead ribozyme-mediated cleavage of an RNA substrate

WB Lott, BW Pontius… - Proceedings of the …, 1998 - National Acad Sciences
Evidence for a two-metal ion mechanism for cleavage of the HH16 hammerhead ribozyme is
provided by monitoring the rate of cleavage of the RNA substrate as a function of La3+ …

Observations on catalysis by hammerhead ribozymes are consistent with a two-divalent-metal-ion mechanism

BW Pontius, WB Lott… - Proceedings of the …, 1997 - National Acad Sciences
Significant cleavage by hammerhead ribozymes requires activation by divalent metal ions.
Several models have been proposed to account for the influence of metal ions on …

NMR solution structure of the lead-dependent ribozyme: evidence for dynamics in RNA catalysis

CG Hoogstraten, P Legault, A Pardi - Journal of molecular biology, 1998 - Elsevier
The NMR solution structure of a lead-dependent ribozyme, known as the leadzyme, is
presented. This ribozyme is among the smallest of the known catalytic RNAs, with an active …

Chemically modified hammerhead ribozymes with improved catalytic rates

AB Burgin, C Gonzalez, J Matulic-Adamic… - Biochemistry, 1996 - ACS Publications
A site-specific chemical modification strategy has been employed to elucidate structure−
function relationships at the only phylogenetically nonconserved position within the core of …

Role of Nd3+ and Pb2+ on the RNA Cleavage Reaction by a Small Ribozyme

T Ohmichi, N Sugimoto - Biochemistry, 1997 - ACS Publications
Leadzyme is a ribozyme that requires Pb2+. We have previously shown that the addition of
Nd3+ in the presence of Pb2+ increased significantly the yield of the RNA cleavage reaction …

Use of intrinsic binding energy for catalysis by an RNA enzyme

KJ Hertel, A Peracchi, OC Uhlenbeck… - Proceedings of the …, 1997 - National Acad Sciences
The contribution of several individual ribozyme⋅ substrate base pairs to binding and
catalysis has been investigated using hammerhead ribozyme substrates that were truncated …

Nucleic acid based strategies as potential therapeutic tools: mechanistic considerations and implications to restenosis

FS Santiago, LM Khachigian - Journal of molecular medicine, 2001 - Springer
The capacity of DNA to bind RNA via Watson-Crick base-pairing is fundamental to antisense
oligonucleotide strategies to inhibit gene expression, and is a property that has been …

Fusing Allosteric Ribozymes with CRISPR‐Cas12a for Efficient Diagnostics of Small Molecule Targets

L Guo, S Zhang, X Du, M Zhou, H Gu - Small Methods, 2024 - Wiley Online Library
The CRISPR‐Cas systems are adopted as powerful molecular tools for not only genetic
manipulation but also point‐of‐care diagnostics. However, methods to enable diagnostics of …