Molecular mechanisms of early plant pattern-triggered immune signaling

TA DeFalco, C Zipfel - Molecular cell, 2021 - cell.com
All eukaryotic organisms have evolved sophisticated immune systems to appropriately
respond to biotic stresses. In plants and animals, a key part of this immune system is pattern …

Protein kinases in plant responses to drought, salt, and cold stress

X Chen, Y Ding, Y Yang, C Song… - Journal of Integrative …, 2021 - Wiley Online Library
Protein kinases are major players in various signal transduction pathways. Understanding
the molecular mechanisms behind plant responses to biotic and abiotic stresses has …

Mutation bias reflects natural selection in Arabidopsis thaliana

JG Monroe, T Srikant, P Carbonell-Bejerano, C Becker… - Nature, 2022 - nature.com
Since the first half of the twentieth century, evolutionary theory has been dominated by the
idea that mutations occur randomly with respect to their consequences. Here we test this …

A multi-omics integrative network map of maize

L Han, W Zhong, J Qian, M Jin, P Tian, W Zhu… - Nature …, 2023 - nature.com
Networks are powerful tools to uncover functional roles of genes in phenotypic variation at a
system-wide scale. Here, we constructed a maize network map that contains the genomic …

Paleoproteomics

C Warinner, K Korzow Richter, MJ Collins - Chemical reviews, 2022 - ACS Publications
Paleoproteomics, the study of ancient proteins, is a rapidly growing field at the intersection of
molecular biology, paleontology, archaeology, paleoecology, and history. Paleoproteomics …

[HTML][HTML] Catalase: A critical node in the regulation of cell fate

A Baker, CC Lin, C Lett, B Karpinska, MH Wright… - Free Radical Biology …, 2023 - Elsevier
Catalase (CAT) is an extensively studied if somewhat enigmatic enzyme that is at the heart
of eukaryotic antioxidant systems with a canonical role in peroxisomal function. The CAT …

Benchmarking commonly used software suites and analysis workflows for DIA proteomics and phosphoproteomics

R Lou, Y Cao, S Li, X Lang, Y Li, Y Zhang… - Nature …, 2023 - nature.com
A plethora of software suites and multiple classes of spectral libraries have been developed
to enhance the depth and robustness of data-independent acquisition (DIA) data …

Abscisic acid regulates secondary cell-wall formation and lignin deposition in Arabidopsis thaliana through phosphorylation of NST1

C Liu, H Yu, X Rao, L Li… - Proceedings of the …, 2021 - National Acad Sciences
Plant secondary cell-wall (SCW) deposition and lignification are affected by both seasonal
factors and abiotic stress, and these responses may involve the hormone abscisic acid …

Undisclosed, unmet and neglected challenges in multi-omics studies

S Tarazona, A Arzalluz-Luque, A Conesa - Nature Computational …, 2021 - nature.com
Multi-omics approaches have become a reality in both large genomics projects and small
laboratories. However, the multi-omics research community still faces a number of issues …

Synthetic promoter designs enabled by a comprehensive analysis of plant core promoters

T Jores, J Tonnies, T Wrightsman, ES Buckler… - Nature Plants, 2021 - nature.com
Targeted engineering of plant gene expression holds great promise for ensuring food
security and for producing biopharmaceuticals in plants. However, this engineering requires …