Distinct evolution of SARS-CoV-2 Omicron XBB and BA. 2.86/JN. 1 lineages combining increased fitness and antibody evasion

D Planas, I Staropoli, V Michel, F Lemoine… - Nature …, 2024 - nature.com
The unceasing circulation of SARS-CoV-2 leads to the continuous emergence of novel viral
sublineages. Here, we isolate and characterize XBB. 1, XBB. 1.5, XBB. 1.9. 1, XBB. 1.16. 1 …

[HTML][HTML] Humoral immune escape by current SARS-CoV-2 variants BA. 2.86 and JN. 1, December 2023

LM Jeworowski, B Mühlemann, F Walper… - …, 2024 - eurosurveillance.org
Variant BA. 2.86 and its descendant, JN. 1, of SARS-CoV-2 are rising in incidence across
Europe and globally. We isolated recent JN. 1, BA. 2.86, EG. 5, XBB. 1.5 and earlier variants …

Neutralization escape, infectivity, and membrane fusion of JN. 1-derived SARS-CoV-2 SLip, FLiRT, and KP. 2 variants

P Li, JN Faraone, CC Hsu, M Chamblee, YM Zheng… - Cell reports, 2024 - cell.com
We investigate JN. 1-derived subvariants SLip, FLiRT, and KP. 2 for neutralization by
antibodies in vaccinated individuals, severe acute respiratory syndrome coronavirus 2 …

[HTML][HTML] Subsequent Waves of Convergent Evolution in SARS-CoV-2 Genes and Proteins

D Focosi, PG Spezia, F Maggi - Vaccines, 2024 - mdpi.com
Beginning in 2022, following widespread infection and vaccination among the global
population, the SARS-CoV-2 virus mainly evolved to evade immunity derived from vaccines …

Lineage-specific pathogenicity, immune evasion, and virological features of SARS-CoV-2 BA. 2.86/JN. 1 and EG. 5.1/HK. 3

Y Liu, X Zhao, J Shi, Y Wang, H Liu, YF Hu… - Nature …, 2024 - nature.com
Abstract SARS-CoV-2 JN. 1 with an additional L455S mutation on spike when compared
with its parental variant BA. 2.86 has outcompeted all earlier variants to become the …

Deep mutational scanning of SARS-CoV-2 Omicron BA. 2.86 and epistatic emergence of the KP. 3 variant

AL Taylor, TN Starr - Virus evolution, 2024 - academic.oup.com
Deep mutational scanning experiments aid in the surveillance and forecasting of viral
evolution by providing prospective measurements of mutational effects on viral traits, but …

Molecular and structural insights into SARS-CoV-2 evolution: from BA. 2 to XBB subvariants

H Yajima, T Nomai, K Okumura, K Maenaka… - Mbio, 2024 - journals.asm.org
Due to the incessant emergence of various SARS-CoV-2 variants with enhanced fitness in
the human population, controlling the COVID-19 pandemic has been challenging …

[HTML][HTML] AlphaFold2 Modeling and Molecular Dynamics Simulations of the Conformational Ensembles for the SARS-CoV-2 Spike Omicron JN. 1, KP. 2 and KP. 3 …

N Raisinghani, M Alshahrani, G Gupta, G Verkhivker - Viruses, 2024 - mdpi.com
The most recent wave of SARS-CoV-2 Omicron variants descending from BA. 2 and BA.
2.86 exhibited improved viral growth and fitness due to convergent evolution of functional …

Phenotypic evolution of SARS-CoV-2 spike during the COVID-19 pandemic

W Furnon, VM Cowton, G De Lorenzo, R Orton… - Nature …, 2025 - nature.com
SARS-CoV-2 variants are mainly defined by mutations in their spike. It is therefore critical to
understand how the evolutionary trajectories of spike affect virus phenotypes. So far, it has …

Characteristics of JN. 1-derived SARS-CoV-2 subvariants SLip, FLiRT, and KP. 2 in neutralization escape, infectivity and membrane fusion

P Li, JN Faraone, CC Hsu, M Chamblee, YM Zheng… - BioRxiv, 2024 - pmc.ncbi.nlm.nih.gov
SUMMARY SARS-CoV-2 variants derived from the immune evasive JN. 1 are on the rise
worldwide. Here, we investigated JN. 1-derived subvariants SLip, FLiRT, and KP. 2 for their …