Molluscan mitochondrial genomes break the rules

F Ghiselli, A Gomes-dos-Santos… - … of the Royal …, 2021 - royalsocietypublishing.org
The first animal mitochondrial genomes to be sequenced were of several vertebrates and
model organisms, and the consistency of genomic features found has led to a 'textbook …

Animal phylogeny and its evolutionary implications

CW Dunn, G Giribet, GD Edgecombe… - Annual review of …, 2014 - annualreviews.org
In recent years, scientists have made remarkable progress reconstructing the animal
phylogeny. There is broad agreement regarding many deep animal relationships, including …

Combining phylogenomic and supermatrix approaches, and a time-calibrated phylogeny for squamate reptiles (lizards and snakes) based on 52 genes and 4162 …

Y Zheng, JJ Wiens - Molecular phylogenetics and evolution, 2016 - Elsevier
Two common approaches for estimating phylogenies in species-rich groups are to:(i)
sample many loci for few species (eg phylogenomic approach), or (ii) sample many species …

[图书][B] Biology and evolution of the mollusca, volume 1

WF Ponder, DR Lindberg, JM Ponder - 2019 - taylorfrancis.com
Molluscs comprise the second largest phylum of animals (after arthropods), occurring in
virtually all habitats. Some are commercially important, a few are pests and some carry …

FASconCAT-G: extensive functions for multiple sequence alignment preparations concerning phylogenetic studies

P Kück, GC Longo - Frontiers in zoology, 2014 - Springer
Background Phylogenetic and population genetic studies often deal with multiple sequence
alignments that require manipulation or processing steps such as sequence concatenation …

Analysis of phylogenomic datasets reveals conflict, concordance, and gene duplications with examples from animals and plants

SA Smith, MJ Moore, JW Brown, Y Yang - BMC evolutionary biology, 2015 - Springer
Background The use of transcriptomic and genomic datasets for phylogenetic reconstruction
has become increasingly common as researchers attempt to resolve recalcitrant nodes with …

Resolution of the ordinal phylogeny of mosses using targeted exons from organellar and nuclear genomes

Y Liu, MG Johnson, CJ Cox, R Medina, N Devos… - Nature …, 2019 - nature.com
Mosses are a highly diverse lineage of land plants, whose diversification, spanning at least
400 million years, remains phylogenetically ambiguous due to the lack of fossils, massive …

Inferring ancient divergences requires genes with strong phylogenetic signals

L Salichos, A Rokas - Nature, 2013 - nature.com
To tackle incongruence, the topological conflict between different gene trees, phylogenomic
studies couple concatenation with practices such as rogue taxon removal or the use of …

Single-molecule sequencing and optical mapping yields an improved genome of woodland strawberry (Fragaria vesca) with chromosome-scale contiguity

PP Edger, R VanBuren, M Colle, TJ Poorten… - …, 2018 - academic.oup.com
Background Although draft genomes are available for most agronomically important plant
species, the majority are incomplete, highly fragmented, and often riddled with assembly …

Resolution of deep angiosperm phylogeny using conserved nuclear genes and estimates of early divergence times

L Zeng, Q Zhang, R Sun, H Kong, N Zhang… - Nature …, 2014 - nature.com
Angiosperms are the most successful plants and support human livelihood and ecosystems.
Angiosperm phylogeny is the foundation of studies of gene function and phenotypic …