Methodology-centered review of molecular modeling, simulation, and prediction of SARS-CoV-2

K Gao, R Wang, J Chen, L Cheng, J Frishcosy… - Chemical …, 2022 - ACS Publications
Despite tremendous efforts in the past two years, our understanding of severe acute
respiratory syndrome coronavirus 2 (SARS-CoV-2), virus–host interactions, immune …

Molecular Docking and Molecular Dynamics Simulations in Related to Leishmania donovani: An Update and Literature Review

MR Challapa-Mamani, E Tomás-Alvarado… - Tropical Medicine and …, 2023 - mdpi.com
Leishmaniasis, a disease caused by Leishmania parasites and transmitted via sandflies,
presents in two main forms: cutaneous and visceral, the latter being more severe. With 0.7 to …

In silico and in vitro studies for benzimidazole anthelmintics repurposing as VEGFR-2 antagonists: novel mebendazole-loaded mixed micelles with enhanced …

AA Elmaaty, KM Darwish, A Chrouda, AA Boseila… - ACS …, 2021 - ACS Publications
Cancer is a leading cause of death worldwide and its incidence is unfortunately anticipated
to rise in the next years. On the other hand, vascular endothelial growth factor receptor 2 …

Investigating the structure–activity relationship of marine natural polyketides as promising SARS-CoV-2 main protease inhibitors

A El-Demerdash, AA Al-Karmalawy, TM Abdel-Aziz… - RSC …, 2021 - pubs.rsc.org
Since its first report in December 2019, the novel coronavirus virus, SARS-CoV-2, has
caused an unprecedented global health crisis and economic loss imposing a tremendous …

β-Blockers bearing hydroxyethylamine and hydroxyethylene as potential SARS-CoV-2 Mpro inhibitors: Rational based design, in silico, in vitro, and SAR studies for …

MIA Hamed, KM Darwish, R Soltane, A Chrouda… - RSC …, 2021 - pubs.rsc.org
The global COVID-19 pandemic became more threatening especially after the introduction
of the second and third waves with the current large expectations for a fourth one as well …

Identification of novel discoidin domain receptor 1 (DDR1) inhibitors using E-pharmacophore modeling, structure-based virtual screening, molecular dynamics …

H Nada, K Lee, L Gotina, AN Pae… - Computers in Biology and …, 2022 - Elsevier
Dysregulation of the discoidin domain receptor (DDR1), a collagen-activated receptor
tyrosine kinase, has been linked to several human cancer diseases including non-small cell …

[HTML][HTML] An overview of potential inhibitors targeting non-structural proteins 3 (PLpro and Mac1) and 5 (3CLpro/Mpro) of SARS-CoV-2

F Yan, F Gao - Computational and structural biotechnology journal, 2021 - Elsevier
There is an urgent need to develop effective treatments for coronavirus disease 2019
(COVID-19), which is caused by severe acute respiratory syndrome coronavirus 2 (SARS …

In silico discovery of multi-targeting inhibitors for the COVID-19 treatment by molecular docking, molecular dynamics simulation studies, and ADMET predictions

AH Hasan, NH Hussen, S Shakya, J Jamalis… - Structural Chemistry, 2022 - Springer
Abstract Coronavirus disease-2019 (COVID-19), a global pandemic, has currently infected
more than 247 million people around the world. Nowadays, several receptors of COVID-19 …

Repurposing α-Adrenoreceptor Blockers as Promising Anti-Virulence Agents in Gram-Negative Bacteria

AJ Almalki, TS Ibrahim, SS Elhady, KM Darwish… - Antibiotics, 2022 - mdpi.com
Antimicrobial resistance is among the world's most urgent public health problems.
Diminishing of the virulence of bacteria is a promising approach to decrease the …

Hiring of the Anti-Quorum Sensing Activities of Hypoglycemic Agent Linagliptin to Alleviate the Pseudomonas aeruginosa Pathogenesis

MT Khayat, TS Ibrahim, KM Darwish, AN Khayyat… - Microorganisms, 2022 - mdpi.com
Bacteria communicate with each other using quorum sensing (QS) which works in an
inducer/receptor manner. QS plays the main role in orchestrating diverse bacterial virulence …