Proteome analysis of tissues by mass spectrometry

I Dapic, L Baljeu‐Neuman, N Uwugiaren… - Mass spectrometry …, 2019 - Wiley Online Library
Tissues and biofluids are important sources of information used for the detection of diseases
and decisions on patient therapies. There are several accepted methods for preservation of …

Molecular correlates for HPV-negative head and neck cancer engraftment prognosticate patient outcomes

M Waas, C Karamboulas, BZ Wu, S Khan… - Nature …, 2024 - nature.com
There is a pressing need to improve risk stratification and treatment selection for HPV-
negative head and neck squamous cell carcinoma (HNSCC) due to the adverse side effects …

Heat 'n Beat: A universal high-throughput end-to-end proteomics sample processing platform in under an hour

D Xavier, N Lucas, SG Williams, JMS Koh… - Analytical …, 2024 - ACS Publications
Proteomic analysis by mass spectrometry of small (≤ 2 mg) solid tissue samples from
diverse formats requires high throughput and comprehensive proteome coverage. We …

[HTML][HTML] Disulfide-bond A oxidoreductase-like protein protects against ectopic fat deposition and lipid-related kidney damage in diabetic nephropathy

X Chen, Y Han, P Gao, M Yang, L Xiao, X Xiong… - Kidney international, 2019 - Elsevier
Ectopic fat deposition (EFD) in the kidney has been shown to play a causal role in diabetic
nephropathy; however, the mechanism underlying EFD remains elusive. By transcriptome …

Removal of optimal cutting temperature (OCT) compound from embedded tissue for MALDI imaging of lipids

JXM Truong, X Spotbeen, J White, JV Swinnen… - Analytical and …, 2021 - Springer
Matrix-assisted laser desorption/ionisation mass spectrometry imaging (MALDI-MSI) is a
common molecular imaging modality used to characterise the abundance and spatial …

The SMYD3-MAP3K2 signaling axis promotes tumor aggressiveness and metastasis in prostate cancer

S Ikram, A Rege, MY Negesse, AG Casanova… - Science …, 2023 - science.org
Aberrant activation of Ras/Raf/mitogen-activated protein kinase (MAPK) signaling is
frequently linked to metastatic prostate cancer (PCa); therefore, the characterization of …

[HTML][HTML] Oncogenic Proteomics Approaches for Translational Research and HIV-Associated Malignancy Mechanisms

E Alvarez-Rivera, EJ Ortiz-Hernández, E Lugo… - Proteomes, 2023 - mdpi.com
Recent advances in the field of proteomics have allowed extensive insights into the
molecular regulations of the cell proteome. Specifically, this allows researchers to dissect a …

Fluorescent immunohistochemistry

V Moreno, EA Smith, S Piña-Oviedo - … and Immunocytochemistry: Methods …, 2021 - Springer
Immunofluorescence is an important immunochemical technique that utilizes fluorescence-
labeled antibodies to detect specific target antigens. It is used widely in both scientific …

Accelerated barocycler lysis and extraction sample preparation for clinical proteomics by mass spectrometry

N Lucas, AB Robinson… - Journal of proteome …, 2018 - ACS Publications
We have developed a streamlined proteomic sample preparation protocol termed
Accelerated Barocycler Lysis and Extraction (ABLE) that substantially reduces the time and …

Quantitative proteomic analysis of prostate tissue specimens identifies deregulated protein complexes in primary prostate cancer

B Zhou, Y Yan, Y Wang, S You, MR Freeman… - Clinical proteomics, 2019 - Springer
Abstract Background Prostate cancer (PCa) is the most frequently diagnosed non-skin
cancer and a leading cause of mortality among males in developed countries. However, our …