Deubiquitinases: From mechanisms to their inhibition by small molecules

SM Lange, LA Armstrong, Y Kulathu - Molecular cell, 2022 - cell.com
Deubiquitinases (DUBs) are specialized proteases that remove ubiquitin from substrates or
cleave within ubiquitin chains to regulate ubiquitylation and therefore play important roles in …

Structural characterization of SARS-CoV-2: where we are, and where we need to be

G Mariano, RJ Farthing, SLM Lale-Farjat… - Frontiers in molecular …, 2020 - frontiersin.org
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has rapidly spread in
humans in almost every country, causing the disease COVID-19. Since the start of the …

Mechanism and inhibition of the papain‐like protease, PLpro, of SARS‐CoV‐2

T Klemm, G Ebert, DJ Calleja, CC Allison… - The EMBO …, 2020 - embopress.org
The SARS‐CoV‐2 coronavirus encodes an essential papain‐like protease domain as part of
its non‐structural protein (nsp)‐3, namely SARS2 PLpro, that cleaves the viral polyprotein …

Biochemical characterization of protease activity of Nsp3 from SARS-CoV-2 and its inhibition by nanobodies

LA Armstrong, SM Lange, V Dee Cesare, SP Matthews… - PloS one, 2021 - journals.plos.org
Of the 16 non-structural proteins (Nsps) encoded by SARS CoV-2, Nsp3 is the largest and
plays important roles in the viral life cycle. Being a large, multidomain, transmembrane …

Role of host-mediated post-translational modifications (PTMs) in RNA virus pathogenesis

R Kumar, D Mehta, N Mishra, D Nayak… - International Journal of …, 2020 - mdpi.com
Being opportunistic intracellular pathogens, viruses are dependent on the host for their
replication. They hijack host cellular machinery for their replication and survival by targeting …

Control of the inflammasome by the ubiquitin system

G Lopez‐Castejon - The FEBS journal, 2020 - Wiley Online Library
Inflammation is the body's response to danger. One of the first immune cell types to
encounter danger is the macrophage. Macrophages sense danger signals such as …

CovInter: interaction data between coronavirus RNAs and host proteins

K Amahong, W Zhang, Y Zhou, S Zhang… - Nucleic Acids …, 2023 - academic.oup.com
Coronavirus has brought about three massive outbreaks in the past two decades. Each step
of its life cycle invariably depends on the interactions among virus and host molecules. The …

Design and synthesis of new 4-(2-nitrophenoxy) benzamide derivatives as potential antiviral agents: Molecular modeling and in vitro antiviral screening

AE Abdallah, MS Alesawy, SI Eissa… - New Journal of …, 2021 - pubs.rsc.org
Regarding the crucial role of deubiquitinase (DUB) enzymes in many viruses, in particular,
Adenovirus, HSV-1, coxsackievirus, and SARS-CoV-2, DUB inhibition was reported as an …

A widely distributed family of eukaryotic and bacterial deubiquitinases related to herpesviral large tegument proteins

I Erven, E Abraham, T Hermanns, U Baumann… - Nature …, 2022 - nature.com
Distinct families of eukaryotic deubiquitinases (DUBs) are regulators of ubiquitin signaling.
Here, we report on the presence of an additional DUB class broadly distributed in …

Modulation of extracellular ISG15 signaling by pathogens and viral effector proteins

CD Swaim, LA Canadeo, KJ Monte, S Khanna… - Cell reports, 2020 - cell.com
ISG15 is a ubiquitin-like modifier that also functions extracellularly, signaling through the
LFA-1 integrin to promote interferon (IFN)-γ release from natural killer (NK) and T cells. The …