The latitudinal taxonomy gradient

BG Freeman, MW Pennell - Trends in Ecology & Evolution, 2021 - cell.com
Emerging large-scale datasets coupled with statistical advances have provided new insights
into the processes that generate the latitudinal diversity gradient (LDG). But many of these …

Annotated checklist of the birds of Brazil by the Brazilian Ornithological Records Committee—second edition

JF Pacheco, LF Silveira, A Aleixo, CE Agne… - Ornithology …, 2021 - Springer
An updated version of the checklist of birds of Brazil is presented, along with a summary of
the changes approved by the Brazilian Ornithological Records Committee's Taxonomy …

MitoFinder: Efficient automated large‐scale extraction of mitogenomic data in target enrichment phylogenomics

R Allio, A Schomaker‐Bastos… - Molecular ecology …, 2020 - Wiley Online Library
Thanks to the development of high‐throughput sequencing technologies, target enrichment
sequencing of nuclear ultraconserved DNA elements (UCEs) now allows routine inference …

Understanding UCEs: a comprehensive primer on using ultraconserved elements for arthropod phylogenomics

YM Zhang, JL Williams, A Lucky - Insect Systematics and …, 2019 - academic.oup.com
Targeted enrichment of ultraconserved elements (UCEs) has emerged as a promising tool
for inferring evolutionary history in many taxa, with utility ranging from phylogenetic and …

A phylogenomic supertree of birds

RT Kimball, CH Oliveros, N Wang, ND White, FK Barker… - Diversity, 2019 - mdpi.com
It has long been appreciated that analyses of genomic data (eg, whole genome sequencing
or sequence capture) have the potential to reveal the tree of life, but it remains challenging …

Resolving the avian tree of life from top to bottom: the promise and potential boundaries of the phylogenomic era

EL Braun, J Cracraft, P Houde - Avian genomics in ecology and evolution …, 2019 - Springer
Reconstructing relationships among extant birds (Neornithes) has been one of the most
difficult problems in phylogenetics, and, despite intensive effort, the avian tree of life remains …

Integrating coalescent species delimitation with analysis of host specificity reveals extensive cryptic diversity despite minimal mitochondrial divergence in the malaria …

SC Galen, R Nunes, PR Sweet, SL Perkins - BMC Evolutionary Biology, 2018 - Springer
Background Coalescent methods that use multi-locus sequence data are powerful tools for
identifying putatively reproductively isolated lineages, though this approach has rarely been …

Phylogenomic species delimitation dramatically reduces species diversity in an Antarctic adaptive radiation

E Parker, A Dornburg, CD Struthers… - Systematic …, 2022 - academic.oup.com
Application of genetic data to species delimitation often builds confidence in delimitations
previously hypothesized using morphological, ecological, and geographic data and …

Phylogenomic analysis of the beetle suborder Adephaga with comparison of tailored and generalized ultraconserved element probe performance

GT Gustafson, SM Baca, AM Alexander… - Systematic …, 2020 - Wiley Online Library
Adephaga is the second largest suborder of beetles (Coleoptera) and they serve as
important arthropod predators in both aquatic and terrestrial ecosystems. The suborder is …

SODA: Multi-locus species delimitation using quartet frequencies

M Rabiee, S Mirarab - Bioinformatics, 2020 - academic.oup.com
Motivation Species delimitation, the process of deciding how to group a set of organisms into
units called species, is one of the most challenging problems in computational evolutionary …