Opportunities from the use of FPGAs as platforms for bioinformatics algorithms

G Chrysos, E Sotiriades, C Rousopoulos… - 2012 IEEE 12th …, 2012 - ieeexplore.ieee.org
This paper presents an in-depth look of how FPGA computing can offer substantial
speedups in the execution of bioinformatics algorithms, with specific results achieved to date …

FPGA-based hardware acceleration for local complexity analysis of massive genomic data

A Papadopoulos, I Kirmitzoglou, VJ Promponas… - Integration, 2013 - Elsevier
While genomics have significantly advanced modern biological achievements, it requires
extensive computational power, traditionally employed on large-scale cluster machines as …

GPU technology as a platform for accelerating local complexity analysis of protein sequences

A Papadopoulos, I Kirmitzoglou… - 2013 35th Annual …, 2013 - ieeexplore.ieee.org
The use of GPGPU programming paradigm (running CUDA-enabled algorithms on GPU
cards) in Bioinformatics showed promising results [1]. As such a similar approach can be …

Accelerating bioinformatics and biomedical applications via massively parallel and reconfigurable systems

AI Papadopoulos - 2014 - gnosis.library.ucy.ac.cy
The quest for advancement in healthcare diagnosis, monitoring and therapy, all key aspects
of improving the quality of life, becomes heavily dependent on high-performance, real-time …

[PDF][PDF] Exploiting Near-Cache Processing for Memory Bound Vector Operations

J Vieira - tecnico.ulisboa.pt
To reduce the average memory access time, most current processors make use of a
multilevel cache subsystem. However, despite the proven benefits of such cache structures …