Defining and quantifying the core microbiome: challenges and prospects

AT Neu, EE Allen, K Roy - Proceedings of the National …, 2021 - National Acad Sciences
The term “core microbiome” has become widely used in microbial ecology over the last
decade. Broadly, the core microbiome refers to any set of microbial taxa, or the genomic and …

Present status and future directions: Microbiology of endodontic infections

JF Siqueira Jr, IN Rôças - International endodontic journal, 2022 - Wiley Online Library
Apical periodontitis has a microbial aetiology and is one of the most common inflammatory
diseases that affect humans. Fungi, archaea and viruses have been found in association …

The human tumor microbiome is composed of tumor type–specific intracellular bacteria

D Nejman, I Livyatan, G Fuks, N Gavert, Y Zwang… - Science, 2020 - science.org
Bacteria were first detected in human tumors more than 100 years ago, but the
characterization of the tumor microbiome has remained challenging because of its low …

Nutrient supply controls the linkage between species abundance and ecological interactions in marine bacterial communities

T Dai, D Wen, CT Bates, L Wu, X Guo, S Liu… - Nature …, 2022 - nature.com
Nutrient scarcity is pervasive for natural microbial communities, affecting species
reproduction and co-existence. However, it remains unclear whether there are general rules …

Enigmatic persistence of dissolved organic matter in the ocean

T Dittmar, ST Lennartz, H Buck-Wiese… - Nature Reviews Earth & …, 2021 - nature.com
Marine dissolved organic matter (DOM) contains more carbon than the combined stocks of
Earth's biota. Organisms in the ocean continuously release a myriad of molecules that …

[图书][B] Environmental DNA: For biodiversity research and monitoring

P Taberlet, A Bonin, L Zinger, E Coissac - 2018 - books.google.com
Environmental DNA (eDNA) refers to DNA that can be extracted from environmental
samples (such as soil, water, feces, or air) without the prior isolation of any target organism …

A communal catalogue reveals Earth's multiscale microbial diversity

LR Thompson, JG Sanders, D McDonald, A Amir… - Nature, 2017 - nature.com
Our growing awareness of the microbial world's importance and diversity contrasts starkly
with our limited understanding of its fundamental structure. Despite recent advances in DNA …

Deciphering diversity indices for a better understanding of microbial communities

BR Kim, J Shin, RB Guevarra, JH Lee… - … of Microbiology and …, 2017 - koreascience.kr
The past decades have been a golden era during which great tasks were accomplished in
the field of microbiology, including food microbiology. In the past, culture-dependent …

[HTML][HTML] Network analysis methods for studying microbial communities: A mini review

MS Matchado, M Lauber, S Reitmeier… - Computational and …, 2021 - Elsevier
Microorganisms including bacteria, fungi, viruses, protists and archaea live as communities
in complex and contiguous environments. They engage in numerous inter-and intra …

Microbial ecology along the gastrointestinal tract

ET Hillman, H Lu, T Yao, CH Nakatsu - Microbes and environments, 2017 - jstage.jst.go.jp
The ecosystem of the human gastrointestinal (GI) tract traverses a number of environmental,
chemical, and physical conditions because it runs from the oral cavity to the anus. These …