Noise in biology

LS Tsimring - Reports on Progress in Physics, 2014 - iopscience.iop.org
Noise permeates biology on all levels, from the most basic molecular, sub-cellular
processes to the dynamics of tissues, organs, organisms and populations. The functional …

Interplay between gene expression noise and regulatory network architecture

G Chalancon, CNJ Ravarani, S Balaji… - Trends in genetics, 2012 - cell.com
Complex regulatory networks orchestrate most cellular processes in biological systems.
Genes in such networks are subject to expression noise, resulting in isogenic cell …

Microbial single-cell RNA sequencing by split-pool barcoding

A Kuchina, LM Brettner, L Paleologu, CM Roco… - Science, 2021 - science.org
INTRODUCTION Bacteria heterogeneously activate gene expression programs in response
to environmental changes, stress, and other stimuli. Such behavior may serve as a bet …

Loss of CDK4/6 activity in S/G2 phase leads to cell cycle reversal

JA Cornwell, A Crncec, MM Afifi, K Tang, R Amin… - Nature, 2023 - nature.com
In mammalian cells, the decision to proliferate is thought to be irreversibly made at the
restriction point of the cell cycle,, when mitogen signalling engages a positive feedback loop …

Cell-to-cell variation in p53 dynamics leads to fractional killing

AL Paek, JC Liu, A Loewer, WC Forrester, G Lahav - Cell, 2016 - cell.com
Many chemotherapeutic drugs kill only a fraction of cancer cells, limiting their efficacy. We
used live-cell imaging to investigate the role of p53 dynamics in fractional killing of colon …

Characterizing bacterial gene circuit dynamics with optically programmed gene expression signals

EJ Olson, LA Hartsough, BP Landry, R Shroff… - Nature methods, 2014 - nature.com
Gene circuits are dynamical systems that regulate cellular behaviors, often using protein
signals as inputs and outputs. Here we have developed an optogenetic'function …

Stochastic switching of cell fate in microbes

TM Norman, ND Lord, J Paulsson… - Annual review of …, 2015 - annualreviews.org
Microbes transiently differentiate into distinct, specialized cell types to generate functional
diversity and cope with changing environmental conditions. Though alternate programs …

Microbial individuality: how single-cell heterogeneity enables population level strategies

BMC Martins, JCW Locke - Current opinion in microbiology, 2015 - Elsevier
Highlights•Gene expression can be surprisingly dynamic and noisy.•Cell to cell
heterogeneity in gene expression state is a widespread phenomenon.•Phenotypic diversity …

Programming bacteria with light—sensors and applications in synthetic biology

Z Liu, J Zhang, J Jin, Z Geng, Q Qi, Q Liang - Frontiers in microbiology, 2018 - frontiersin.org
Photo-receptors are widely present in both prokaryotic and eukaryotic cells, which serves as
the foundation of tuning cell behaviors with light. While practices in eukaryotic cells have …

Retroactivity controls the temporal dynamics of gene transcription

S Jayanthi, KS Nilgiriwala, D Del Vecchio - ACS synthetic biology, 2013 - ACS Publications
Just like in many engineering systems, impedance-like effects, called retroactivity, arise at
the interconnection of biomolecular circuits, leading to unexpected changes in a circuit's …