Applications of molecular dynamics simulation in protein study

S Sinha, B Tam, SM Wang - Membranes, 2022 - mdpi.com
Molecular Dynamics (MD) Simulations is increasingly used as a powerful tool to study
protein structure-related questions. Starting from the early simulation study on the …

Interaction of SARS-CoV-2 with host cells and antibodies: experiment and simulation

H Nguyen, HL Nguyen, PD Lan, NQ Thai… - Chemical Society …, 2023 - pubs.rsc.org
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is the causative agent of
the devastating global COVID-19 pandemic announced by WHO in March 2020. Through …

Telaprevir is a potential drug for repurposing against SARS-CoV-2: computational and in vitro studies

A Mahmoud, A Mostafa, AA Al-Karmalawy, A Zidan… - Heliyon, 2021 - cell.com
Drug repurposing is an important approach to the assignment of already approved drugs for
new indications. This technique bypasses some steps in the traditional drug approval …

Cetaceans as bio-indicators revealed the increased risks of triclosan exposure and associated thyroid hormone disruption during the COVID-19 pandemic

Y Guo, W Shi, Z Liu, X Sun, Y Wu - Journal of Hazardous Materials, 2023 - Elsevier
The global surge in disinfection practices from the COVID-19 response has raised concerns
about the marine exposure to the hazardous ingredients in disinfectant products, including …

Molecular dynamics simulations highlight the altered binding landscape at the spike-ACE2 interface between the Delta and Omicron variants compared to the SARS …

E Pitsillou, JJ Liang, RC Beh, A Hung… - Computers in Biology …, 2022 - Elsevier
The severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) B. 1.1. 529 variant
(Omicron), represents a significant deviation in genetic makeup and function compared to …

DFT and MD simulation investigation of favipiravir as an emerging antiviral option against viral protease (3CLpro) of SARS-CoV-2

P Yadav, M Rana, P Chowdhury - Journal of Molecular Structure, 2021 - Elsevier
As per date, around 20 million COVID-19 cases reported from across the globe due to a tiny
125 nm sized virus: SARS-CoV-2 which has created a pandemic and left an unforgettable …

Molecular insights and optimization strategies for the competitive binding of engineered ACE2 proteins: A multiple replica molecular dynamics study

J Sun, X Liu, S Zhang, M Li, Q Zhang… - Physical Chemistry …, 2023 - pubs.rsc.org
The COVID-19 pandemic caused by severe acute respiratory syndrome coronavirus-2
(SARS-CoV-2) continues to spread globally, and rapid viral evolution and the emergence of …

Molecular insights into the differential dynamics of SARS-CoV-2 variants of concern

N Mandal, AK Padhi, SL Rath - Journal of Molecular Graphics and …, 2022 - Elsevier
Abstract Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) has affected the
lives and livelihood of millions of individuals around the world. It has mutated several times …

Neoechinulin A as a Promising SARS-CoV-2 Mpro Inhibitor: In Vitro and In Silico Study Showing the Ability of Simulations in Discerning Active from Inactive Enzyme …

HA Alhadrami, G Burgio, B Thissera, R Orfali, SE Jiffri… - Marine drugs, 2022 - mdpi.com
The COVID-19 pandemic and its continuing emerging variants emphasize the need to
discover appropriate treatment, where vaccines alone have failed to show complete …

Toward a regulatory pathway for the use of in silico trials in the CE marking of medical devices

F Pappalardo, J Wilkinson, F Busquet… - IEEE Journal of …, 2022 - ieeexplore.ieee.org
In Silico Trials methodologies will play a growing and fundamental role in the development
and de-risking of new medical devices in the future. While the regulatory pathway for Digital …