Molecular dynamics simulations: advances and applications

A Hospital, JR Goñi, M Orozco… - … and Applications in …, 2015 - Taylor & Francis
Molecular dynamics simulations have evolved into a mature technique that can be used
effectively to understand macromolecular structure-to-function relationships. Present …

Solution NMR spectroscopy for the study of enzyme allostery

GP Lisi, JP Loria - Chemical reviews, 2016 - ACS Publications
Allostery is a ubiquitous biological regulatory process in which distant binding sites within a
protein or enzyme are functionally and thermodynamically coupled. Allosteric interactions …

Interactions of benzotriazole UV stabilizers with human serum albumin: Atomic insights revealed by biosensors, spectroscopies and molecular dynamics simulations

S Zhuang, H Wang, K Ding, J Wang, L Pan, Y Lu, Q Liu… - Chemosphere, 2016 - Elsevier
Benzotriazole UV stabilizers (BZTs) belong to one prominent group of ultraviolet (UV)
stabilizers and are widely used in various plastics materials. Their large production volumes …

New insights into methane hydrate dissociation: Utilization of molecular dynamics strategy

J Kondori, S Zendehboudi, L James - Fuel, 2019 - Elsevier
Hydrate reserves play a crucial role in energy storage and resources across the world. Gas
hydrate formation may lead to various forms of blockages in oil/gas production and …

Deciphering Internal Regulatory Patterns within the p53 Core Tetramer: Insights from Community Network Analysis

H Zhou, S Yan - The Journal of Physical Chemistry Letters, 2024 - ACS Publications
Gene therapy is one of the most effective strategies for cancer treatment. The p53 protein,
commonly known as the “guardian of the genome”, plays a critical role in gene activation …

Mechanistic insight into the destabilization of p53TD tetramer by cancer-related R337H mutation: a molecular dynamics study

Y Yu, X Dong, Y Tang, L Li, G Wei - Physical Chemistry Chemical …, 2022 - pubs.rsc.org
The p53 protein is a tumor suppressor crucial for cell cycle and genome integrity. In a very
large proportion of human cancers, p53 is frequently inactivated by mutations located in its …

Multi-spectroscopic and voltammetric evidences for binding, conformational changes of bovine serum albumin with thiamine

AM Bagoji, JI Gowda, NM Gokavi… - Journal of …, 2017 - Taylor & Francis
The interaction between thiamine hydrochloride (TA) and bovine serum albumin (BSA) was
investigated by fluorescence, FTIR, UV–vis spectroscopic and cyclic voltammetric …

Does Risk of Hyperhomocysteinemia Depend on Thiol-Disulfide Exchange Reactions of Albumin and Homocysteine?

L Coppo, S Scheggi, G DeMontis, R Priora… - Antioxidants & redox …, 2023 - liebertpub.com
Significance: Increased plasma concentrations of total homocysteine (tHcy; mild-moderate
hyperhomocysteinemia: 15–50 μ M tHcy) are considered an independent risk factor for the …

Application of computational techniques to unravel structure-function relationship and their role in therapeutic development

TC Yadav, AK Srivastava, A Dey… - Current Topics in …, 2018 - ingentaconnect.com
Application of computational tools and techniques has emerged as an invincible instrument
to unravel the structure-function relationship and offered better mechanistic insights in the …

Structural and dynamical mechanisms of a naturally occurring variant of the human prion protein in preventing prion conversion

Y Tang, Y Yao, G Wei - Chinese Physics B, 2020 - iopscience.iop.org
Prion diseases are associated with the misfolding of the normal helical cellular form of prion
protein (PrP C) into the β-sheet-rich scrapie form (PrP Sc) and the subsequent aggregation …