[HTML][HTML] Dynamic control in metabolic engineering: Theories, tools, and applications

CJ Hartline, AC Schmitz, Y Han, F Zhang - Metabolic engineering, 2021 - Elsevier
Metabolic engineering has allowed the production of a diverse number of valuable
chemicals using microbial organisms. Many biological challenges for improving bio …

Applications of artificial intelligence and machine learning in dynamic pathway engineering

C Merzbacher, DA Oyarzún - Biochemical Society Transactions, 2023 - portlandpress.com
Dynamic pathway engineering aims to build metabolic production systems embedded with
intracellular control mechanisms for improved performance. These control systems enable …

Fundamental design principles for transcription-factor-based metabolite biosensors

AA Mannan, D Liu, F Zhang, DA Oyarzún - ACS synthetic biology, 2017 - ACS Publications
Metabolite biosensors are central to current efforts toward precision engineering of
metabolism. Although most research has focused on building new biosensors, their …

Dynamic metabolic control: towards precision engineering of metabolism

D Liu, AA Mannan, Y Han, DA Oyarzún… - Journal of Industrial …, 2018 - academic.oup.com
Advances in metabolic engineering have led to the synthesis of a wide variety of valuable
chemicals in microorganisms. The key to commercializing these processes is the …

Bayesian optimization for design of multiscale biological circuits

C Merzbacher, O Mac Aodha… - ACS Synthetic Biology, 2023 - ACS Publications
Recent advances in synthetic biology have enabled the construction of molecular circuits
that operate across multiple scales of cellular organization, such as gene regulation …

Stochastic modelling reveals mechanisms of metabolic heterogeneity

MK Tonn, P Thomas, M Barahona… - Communications biology, 2019 - nature.com
Phenotypic variation is a hallmark of cellular physiology. Metabolic heterogeneity, in
particular, underpins single-cell phenomena such as microbial drug tolerance and growth …

Trade-offs in biosensor optimization for dynamic pathway engineering

BK Verma, AA Mannan, F Zhang… - ACS synthetic …, 2021 - ACS Publications
Recent progress in synthetic biology allows the construction of dynamic control circuits for
metabolic engineering. This technology promises to overcome many challenges …

Designing an irreversible metabolic switch for scalable induction of microbial chemical production

AA Mannan, DG Bates - Nature Communications, 2021 - nature.com
Bacteria can be harnessed to synthesise high-value chemicals. A promising strategy for
increasing productivity uses inducible control systems to switch metabolism from growth to …

Modular, robust, and extendible multicellular circuit design in yeast

A Carignano, C Mallory, RC Wright, G Seelig, E Klavins - Elife, 2022 - elifesciences.org
Division of labor between cells is ubiquitous in biology but the use of multicellular consortia
for engineering applications is only beginning to be explored. A significant advantage of …

Engineering Chimeric Chemoreceptors and Two-Component Systems for Orthogonal and Leakless Biosensing of Extracellular γ-Aminobutyric Acid

J Zhao, H Sun, G Wang, Q Wang, Y Wang… - Journal of Agricultural …, 2024 - ACS Publications
Two-component systems (TCSs) sensing and responding to various stimuli outside and
inside cells are valuable resources for developing biosensors with synthetic biology …