Within-host evolution of the gut microbiome

T Dapa, DPGH Wong, KS Vasquez, KB Xavier… - Current Opinion in …, 2023 - Elsevier
Gut bacteria inhabit a complex environment that is shaped by interactions with their host and
the other members of the community. While these ecological interactions have evolved over …

Randomly barcoded transposon mutant libraries for gut commensals I: Strategies for efficient library construction

S Tripathi, CGP Voogdt, SO Bassler, M Anderson… - Cell Reports, 2024 - cell.com
Randomly barcoded transposon mutant libraries are powerful tools for studying gene
function and organization, assessing gene essentiality and pathways, discovering potential …

Harnessing crop diversity

SR McCouch, LH Rieseberg - Proceedings of the National …, 2023 - National Acad Sciences
Global food systems face unprecedented challenges from climate change, extreme weather
events, land and water constraints, biodiversity loss, soil degradation, market volatility, and …

High-throughput protein characterization by complementation using DNA barcoded fragment libraries

BW Biggs, MN Price, D Lai, J Escobedo… - Molecular Systems …, 2024 - embopress.org
Our ability to predict, control, or design biological function is fundamentally limited by poorly
annotated gene function. This can be particularly challenging in non-model systems …

Gut microbiota of the small intestine as an antimicrobial barrier against foodborne pathogens: Impact of diet on the survival of S. Typhimurium and L. monocytogenes …

T Akritidou, S Akkermans, C Smet, S Gaspari… - Food Research …, 2023 - Elsevier
The human gastrointestinal tract employs an assortment of chemical, enzymatic and immune
barriers to impede pathogen colonization. An essential component of these barriers is the …

Simvastatin induces human gut bacterial cell surface genes

V Escalante, RR Nayak, C Noecker… - Molecular …, 2024 - Wiley Online Library
Drugs intended to target mammalian cells can have broad off‐target effects on the human
gut microbiota with potential downstream consequences for drug efficacy and side effect …

The new green challenge in urban planning: The right genetics in the right place

S Farinati, A Betto, F Palumbo, F Scariolo, A Vannozzi… - Horticulturae, 2022 - mdpi.com
The creation of green areas within urban centers was born as a response to profoundly
different problems, such as the demographic increase and the progressive urbanization of …

Phased genome assemblies reveal haplotype‐specific genetic load in the critically endangered Chinese Bahaba (Teleostei, Sciaenidae)

R Cui, J Wu, K Yan, S Luo, Y Hu, W Feng… - Molecular …, 2024 - Wiley Online Library
While haplotype‐specific genetic load shapes the evolutionary trajectory of natural and
captive populations, mixed‐haplotype assembly and genotyping hindered its …

Heritable differences in abundance of bacterial rhizosphere taxa are correlated with fungal necrotrophic pathogen resistance

CS Pogoda, KG Keepers, S Reinert… - Molecular …, 2024 - Wiley Online Library
Host–microbe interactions are increasingly recognized as important drivers of organismal
health, growth, longevity and community‐scale ecological processes. However, less is …

Gene expression and alternative splicing contribute to adaptive divergence of ecotypes

PA Innes, AM Goebl, CCR Smith, K Rosenberger… - Heredity, 2024 - nature.com
Regulation of gene expression is a critical link between genotype and phenotype explaining
substantial heritable variation within species. However, we are only beginning to understand …