Challenges and emergent solutions for LC‐MS/MS based untargeted metabolomics in diseases

L Cui, H Lu, YH Lee - Mass spectrometry reviews, 2018 - Wiley Online Library
In the past decade, advances in liquid chromatography‐mass spectrometry (LC‐MS) have
revolutionized untargeted metabolomics analyses. By mining metabolomes more deeply …

Comprehensive analysis of lipids in biological systems by liquid chromatography-mass spectrometry

T Cajka, O Fiehn - TrAC Trends in Analytical Chemistry, 2014 - Elsevier
Liquid chromatography-mass spectrometry (LC-MS)-based lipidomics has undergone
dramatic developments over the past decade. This review focuses on state of the art in LC …

PERK is a critical metabolic hub for immunosuppressive function in macrophages

LN Raines, H Zhao, Y Wang, HY Chen… - Nature …, 2022 - nature.com
Chronic inflammation triggers compensatory immunosuppression to stop inflammation and
minimize tissue damage. Studies have demonstrated that endoplasmic reticulum (ER) stress …

METLIN: a technology platform for identifying knowns and unknowns

C Guijas, JR Montenegro-Burke… - Analytical …, 2018 - ACS Publications
METLIN originated as a database to characterize known metabolites and has since
expanded into a technology platform for the identification of known and unknown …

Comparison of full-scan, data-dependent, and data-independent acquisition modes in liquid chromatography–mass spectrometry based untargeted metabolomics

J Guo, T Huan - Analytical Chemistry, 2020 - ACS Publications
Full-scan, data-dependent acquisition (DDA), and data-independent acquisition (DIA) are
the three common data acquisition modes in high resolution mass spectrometry-based …

Current approaches and challenges for the metabolite profiling of complex natural extracts

JL Wolfender, G Marti, A Thomas, S Bertrand - Journal of Chromatography …, 2015 - Elsevier
Metabolite profiling is critical in many aspects of the life sciences, particularly natural product
research. Obtaining precise information on the chemical composition of complex natural …

Nutrimetabolomics: an integrative action for metabolomic analyses in human nutritional studies

MM Ulaszewska, CH Weinert… - Molecular nutrition & …, 2019 - Wiley Online Library
The life sciences are currently being transformed by an unprecedented wave of
developments in molecular analysis, which include important advances in instrumental …

Systems-level annotation of a metabolomics data set reduces 25 000 features to fewer than 1000 unique metabolites

NG Mahieu, GJ Patti - Analytical chemistry, 2017 - ACS Publications
When using liquid chromatography/mass spectrometry (LC/MS) to perform untargeted
metabolomics, it is now routine to detect tens of thousands of features from biological …

[HTML][HTML] Metabolism links bacterial biofilms and colon carcinogenesis

CH Johnson, CM Dejea, D Edler, LT Hoang… - Cell metabolism, 2015 - cell.com
Bacterial biofilms in the colon alter the host tissue microenvironment. A role for biofilms in
colon cancer metabolism has been suggested but to date has not been evaluated. Using …

Lactate metabolism is associated with mammalian mitochondria

YJ Chen, NG Mahieu, X Huang, M Singh… - Nature chemical …, 2016 - nature.com
It is well established that lactate secreted by fermenting cells can be oxidized or used as a
gluconeogenic substrate by other cells and tissues. It is generally assumed, however, that …