On the maverick Planctomycetes

S Wiegand, M Jogler, C Jogler - FEMS microbiology reviews, 2018 - academic.oup.com
Planctomycetes are ubiquitous, environmentally and biotechnologically important bacteria
that are key players in global carbon and nitrogen cycles. Ever since their first discovery in …

The genus Sphingopyxis: Systematics, ecology, and bioremediation potential-A review

M Sharma, H Khurana, DN Singh, RK Negi - Journal of Environmental …, 2021 - Elsevier
The genus Sphingopyxis was first reported in the year 2001. Phylogenetically, Sphingopyxis
is well delineated from other genera Sphingobium, Sphingomonas and Novosphingobium of …

[HTML][HTML] Anvi'o: an advanced analysis and visualization platform for 'omics data

AM Eren, ÖC Esen, C Quince, JH Vineis, HG Morrison… - PeerJ, 2015 - peerj.com
Advances in high-throughput sequencing and 'omics technologies are revolutionizing
studies of naturally occurring microbial communities. Comprehensive investigations of …

Genome-reconstruction for eukaryotes from complex natural microbial communities

PT West, AJ Probst, IV Grigoriev, BC Thomas… - Genome …, 2018 - genome.cshlp.org
Microbial eukaryotes are integral components of natural microbial communities, and their
inclusion is critical for many ecosystem studies, yet the majority of published metagenome …

Stable isotope informed genome-resolved metagenomics reveals that Saccharibacteria utilize microbially-processed plant-derived carbon

EP Starr, S Shi, SJ Blazewicz, AJ Probst, DJ Herman… - Microbiome, 2018 - Springer
Background The transformation of plant photosynthate into soil organic carbon and its
recycling to CO 2 by soil microorganisms is one of the central components of the terrestrial …

[HTML][HTML] Biodegradation of cyanide wastes from mining and jewellery industries

VM Luque-Almagro, C Moreno-Vivian… - Current opinion in …, 2016 - Elsevier
Highlights•Cyanotrophic microorganisms that can use cyanide are available.•
Bioremediation of cyanurated industrial wastes can be applied.•Cyan-omics will contribute …

Updated virophage taxonomy and distinction from polinton-like viruses

S Roux, MG Fischer, T Hackl, LA Katz, F Schulz… - Biomolecules, 2023 - mdpi.com
Virophages are small dsDNA viruses that hijack the machinery of giant viruses during the co-
infection of a protist (ie, microeukaryotic) host and represent an exceptional case of …

Genomic signatures and co‐occurrence patterns of the ultra‐small Saccharimonadia (phylum CPR/Patescibacteria) suggest a symbiotic lifestyle

LN Lemos, JD Medeiros, F Dini‐Andreote… - Molecular …, 2019 - Wiley Online Library
The size of bacterial genomes is often associated with organismal metabolic capabilities
determining ecological breadth and lifestyle. The recently proposed Candidate Phyla …

Microbial life in the deep subsurface aquifer illuminated by metagenomics

VV Kadnikov, AV Mardanov, AV Beletsky… - Frontiers in …, 2020 - frontiersin.org
To get insights into microbial diversity and biogeochemical processes in the terrestrial deep
subsurface aquifer, we sequenced the metagenome of artesian water collected at a 2.8 km …

Lists of names of prokaryotic Candidatus taxa

A Oren, GM Garrity, CT Parker, M Chuvochina… - 2020 - microbiologyresearch.org
We here present annotated lists of names of Candidatus taxa of prokaryotes with ranks
between subspecies and class, proposed between the mid-1990s, when the provisional …