A field guide to eukaryotic transposable elements

JN Wells, C Feschotte - Annual review of genetics, 2020 - annualreviews.org
Transposable elements (TEs) are mobile DNA sequences that propagate within genomes.
Through diverse invasion strategies, TEs have come to occupy a substantial fraction of …

The contributions of transposable elements to the structure, function, and evolution of plant genomes

JL Bennetzen, H Wang - Annual review of plant biology, 2014 - annualreviews.org
Transposable elements (TEs) are the key players in generating genomic novelty by a
combination of the chromosome rearrangements they cause and the genes that come under …

Crop genomics: advances and applications

PL Morrell, ES Buckler, J Ross-Ibarra - Nature Reviews Genetics, 2012 - nature.com
The completion of reference genome sequences for many important crops and the ability to
perform high-throughput resequencing are providing opportunities for improving our …

LTR-retrotransposons in plants: Engines of evolution

L Galindo-González, C Mhiri, MK Deyholos… - Gene, 2017 - Elsevier
LTR retrotransposons are the most abundant group of transposable elements (TEs) in
plants. These elements can fall inside or close to genes, and therefore influence their …

Twenty years of transposable element analysis in the Arabidopsis thaliana genome

H Quesneville - Mobile DNA, 2020 - Springer
Transposable elements (TEs) are mobile repetitive DNA sequences shown to be major
drivers of genome evolution. As the first plant to have its genome sequenced and analyzed …

The dynamism of transposon methylation for plant development and stress adaptation

M Ramakrishnan, L Satish, R Kalendar… - International Journal of …, 2021 - mdpi.com
Plant development processes are regulated by epigenetic alterations that shape nuclear
structure, gene expression, and phenotypic plasticity; these alterations can provide the plant …

Evolutionary patterns of genic DNA methylation vary across land plants

S Takuno, JH Ran, BS Gaut - Nature plants, 2016 - nature.com
Little is known about patterns of genic DNA methylation across the plant kingdom or about
the evolutionary processes that shape them. To characterize gene-body methylation (gbM) …

Transposable elements and small RNAs contribute to gene expression divergence between Arabidopsis thaliana and Arabidopsis lyrata

JD Hollister, LM Smith, YL Guo, F Ott… - Proceedings of the …, 2011 - National Acad Sciences
Transposable elements (TEs) are often the primary determinant of genome size differences
among eukaryotes. In plants, the proliferation of TEs is countered through epigenetic …

The important contribution of transposable elements to phenotypic variation and evolution

NS Catlin, EB Josephs - Current opinion in plant biology, 2022 - Elsevier
Transposable elements (TEs) are responsible for significant genomic variation in plants. Our
understanding of the evolutionary forces shaping TE polymorphism has lagged behind other …

[HTML][HTML] From snoRNA to miRNA: Dual function regulatory non-coding RNAs

MS Scott, M Ono - Biochimie, 2011 - Elsevier
Small nucleolar RNAs (snoRNAs) are an ancient class of small non-coding RNAs present in
all eukaryotes and a subset of archaea that carry out a fundamental role in the modification …