[HTML][HTML] Intestinal organoid cocultures with microbes

J Puschhof, C Pleguezuelos-Manzano… - Nature protocols, 2021 - nature.com
Adult-stem-cell-derived organoids model human epithelial tissues ex vivo, which enables
the study of host–microbe interactions with great experimental control. This protocol …

[HTML][HTML] Long non-coding RNAs in the regulation of gene expression: physiology and disease

JCR Fernandes, SM Acuña, JI Aoki, LM Floeter-Winter… - Non-coding RNA, 2019 - mdpi.com
The identification of RNAs that are not translated into proteins was an important
breakthrough, defining the diversity of molecules involved in eukaryotic regulation of gene …

Immunometabolism at the interface between macrophages and pathogens

DG Russell, L Huang, BC VanderVen - Nature Reviews Immunology, 2019 - nature.com
It is generally regarded that the progression of an infection within host macrophages is the
consequence of a failed immune response. However, recent appreciation of macrophage …

[HTML][HTML] Evolution of drug-resistant Mycobacterium tuberculosis strains and their adaptation to the human lung environment

A Allué-Guardia, JI García, JB Torrelles - Frontiers in Microbiology, 2021 - frontiersin.org
In the last two decades, multi (MDR), extensively (XDR), extremely (XXDR) and total (TDR)
drug-resistant Mycobacterium tuberculosis (M. tb) strains have emerged as a threat to public …

[HTML][HTML] Host genetics and infectious disease: new tools, insights and translational opportunities

AJ Kwok, A Mentzer, JC Knight - Nature Reviews Genetics, 2021 - nature.com
Understanding how human genetics influence infectious disease susceptibility offers the
opportunity for new insights into pathogenesis, potential drug targets, risk stratification …

[HTML][HTML] A Pseudomonas aeruginosa small RNA regulates chronic and acute infection

P Cao, D Fleming, DA Moustafa, SK Dolan… - Nature, 2023 - nature.com
The ability to switch between different lifestyles allows bacterial pathogens to thrive in
diverse ecological niches,. However, a molecular understanding of their lifestyle changes …

[HTML][HTML] Translating RNA sequencing into clinical diagnostics: opportunities and challenges

SA Byron, KR Van Keuren-Jensen… - Nature Reviews …, 2016 - nature.com
With the emergence of RNA sequencing (RNA-seq) technologies, RNA-based biomolecules
hold expanded promise for their diagnostic, prognostic and therapeutic applicability in …

Trans-Acting Small RNAs and Their Effects on Gene Expression in Escherichia coli and Salmonella enterica

J Hör, G Matera, J Vogel, S Gottesman, G Storz - EcoSal Plus, 2020 - Am Soc Microbiol
The last few decades have led to an explosion in our understanding of the major roles that
small regulatory RNAs (sRNAs) play in regulatory circuits and the responses to stress in …

Salmonella persisters undermine host immune defenses during antibiotic treatment

DAC Stapels, PWS Hill, AJ Westermann, RA Fisher… - Science, 2018 - science.org
Many bacterial infections are hard to treat and tend to relapse, possibly due to the presence
of antibiotic-tolerant persisters. In vitro, persister cells appear to be dormant. After uptake of …

Single-cell RNA-sequencing reports growth-condition-specific global transcriptomes of individual bacteria

F Imdahl, E Vafadarnejad, C Homberger… - Nature …, 2020 - nature.com
Bacteria respond to changes in their environment with specific transcriptional programmes,
but even within genetically identical populations these programmes are not homogenously …