[HTML][HTML] Intrinsic dynamics is evolutionarily optimized to enable allosteric behavior

Y Zhang, P Doruker, B Kaynak, S Zhang… - Current opinion in …, 2020 - Elsevier
Highlights•The intrinsic dynamics, encoded in proteins' sequences and structures, are
utilized by stimuli to trigger allosteric and functional actions.•The modes of allosteric actions …

Shared and unique features of human interferon-beta and interferon-alpha subtypes

MC Wittling, SR Cahalan, EA Levenson… - Frontiers in …, 2021 - frontiersin.org
Type I interferons (IFN-I) were first discovered as an antiviral factor by Isaacs and
Lindenmann in 1957, but they are now known to also modulate innate and adaptive …

Microbiota-derived acetate protects against respiratory syncytial virus infection through a GPR43-type 1 interferon response

KH Antunes, JL Fachi, R de Paula, EF da Silva… - Nature …, 2019 - nature.com
Severe respiratory syncytial virus (RSV) infection is a major cause of morbidity and mortality
in infants< 2 years-old. Here we describe that high-fiber diet protects mice from RSV …

Structural dynamics in the evolution of a bilobed protein scaffold

G Gouridis, YA Muthahari, M de Boer… - Proceedings of the …, 2021 - National Acad Sciences
Novel biophysical tools allow the structural dynamics of proteins and the regulation of such
dynamics by binding partners to be explored in unprecedented detail. Although this has …

Structure–function of type I and III interferons

NA de Weerd, AK Kurowska, JL Mendoza… - Current Opinion in …, 2024 - Elsevier
Type I and type III interferons (IFNs) are major components in activating the innate immune
response. Common to both are two distinct receptor chains (IFNAR1/IFNAR2 and …

A dual role for the N-terminal domain of the IL-3 receptor in cell signalling

SE Broughton, TR Hercus, TL Nero, WL Kan… - Nature …, 2018 - nature.com
Abstract The interleukin-3 (IL-3) receptor is a cell-surface heterodimer that links the
haemopoietic, vascular and immune systems and is overexpressed in acute and chronic …

Mapping determinants of cytokine signaling via protein engineering

C Gorby, J Martinez-Fabregas, S Wilmes… - Frontiers in …, 2018 - frontiersin.org
Cytokines comprise a large family of secreted ligands that are critical for the regulation of
immune homeostasis. Cytokines initiate signaling via dimerization or oligomerization of the …

Structural integrity with functional plasticity: What type I IFN receptor polymorphisms reveal

NA de Weerd, JP Vivian, SS Lim… - Journal of Leucocyte …, 2020 - academic.oup.com
The type I IFNs activate an array of signaling pathways, which are initiated after IFNs bind
their cognate receptors, IFNα/β receptor (IFNAR) 1 and IFNAR2. These signals contribute to …

Mechanism of CcdA-mediated rejuvenation of DNA Gyrase

NK Aghera, J Prabha, H Tandon, G Chattopadhyay… - Structure, 2020 - cell.com
Most biological processes involve formation of transient complexes where binding of a
ligand allosterically modulates function. The ccd toxin-antitoxin system is involved in plasmid …

De novo developed protein binders mimicking Interferon lambda signaling

L Kolářová, J Zahradník, M Huličiak… - The FEBS …, 2022 - Wiley Online Library
We hereby describe the process of design and selection of nonantibody protein binders
mimicking cytokine signaling. We chose to mimic signaling of IFN‐λ1, type 3 interferon (also …