Structure of condensed phase peptides: insights from vibrational circular dichroism and Raman optical activity techniques

TA Keiderling - Chemical reviews, 2020 - ACS Publications
Peptides and proteins are naturally chiral molecular systems so that sensing their structure
and conformation with chirality-based spectral methods is an obvious and long-used …

Raman spectroscopy of proteins: from peptides to large assemblies

R Tuma - Journal of Raman Spectroscopy: An International …, 2005 - Wiley Online Library
Raman spectroscopy has become a versatile tool in protein science and biotechnology.
Recent advances in spectral assignments and vibrational theory, examples of use in …

Comparison of multiple Amber force fields and development of improved protein backbone parameters

V Hornak, R Abel, A Okur, B Strockbine… - Proteins: Structure …, 2006 - Wiley Online Library
The ff94 force field that is commonly associated with the Amber simulation package is one of
the most widely used parameter sets for biomolecular simulation. After a decade of …

Structure and dynamics of the homologous series of alanine peptides: a joint molecular dynamics/NMR study

J Graf, PH Nguyen, G Stock… - Journal of the American …, 2007 - ACS Publications
The ϕ, ψ backbone angle distribution of small homopolymeric model peptides is
investigated by a joint molecular dynamics (MD) simulation and heteronuclear NMR study …

Conformation of the backbone in unfolded proteins

Z Shi, K Chen, Z Liu, NR Kallenbach - Chemical reviews, 2006 - ACS Publications
Despite its theoretical and practical importance, protein folding remains among the most
fundamental unsolved problems in the life sciences. The challenge of predicting folded …

A review on ion-exchange membrane fouling during the electrodialysis process in the food industry, part 1: Types, effects, characterization methods, fouling …

L Dammak, J Fouilloux, M Bdiri, C Larchet, E Renard… - Membranes, 2021 - mdpi.com
Electrodialysis (ED) was first established for water desalination and is still highly
recommended in this field for its high water recovery, long lifetime and acceptable electricity …

The structure of “unstructured” regions in peptides and proteins: role of the polyproline II helix in protein folding and recognition

A Rath, AR Davidson, CM Deber - Peptide Science: Original …, 2005 - Wiley Online Library
Classical descriptions of the three‐dimensional shapes of proteins usually invoke three
main structures: α‐helix, β‐sheet, and β‐turn. More recently, the polyproline II (PPII) structure …

Strike a balance: optimization of backbone torsion parameters of AMBER polarizable force field for simulations of proteins and peptides

ZX Wang, W Zhang, C Wu, H Lei… - Journal of …, 2006 - Wiley Online Library
Based on the AMBER polarizable model (ff02), we have reoptimized the parameters related
to the main‐chain (Φ, Ψ) torsion angles by fitting to the Boltzmann‐weighted average …

Circular dichroism spectrum of peptides in the poly (Pro) II conformation

RW Woody - Journal of the American Chemical Society, 2009 - ACS Publications
The poly (Pro) II (PII) conformation is increasingly recognized as an important element in
peptide and protein conformation. Circular dichroism (CD) is one of the most useful methods …

Advances in vibrational spectroscopy as a sensitive probe of peptide and protein structure: A critical review

R Schweitzer-Stenner - Vibrational Spectroscopy, 2006 - Elsevier
Over the last 40 years the theoretical basis has been developed for using vibrational
spectroscopy as a tool for peptide and protein structure analysis. In spite of these efforts it is …