The bacterial ribosome as a target for antibiotics

J Poehlsgaard, S Douthwaite - Nature Reviews Microbiology, 2005 - nature.com
Many clinically useful antibiotics exert their antimicrobial effects by blocking protein
synthesis on the bacterial ribosome. The structure of the ribosome has recently been …

tRNA's wobble decoding of the genome: 40 years of modification

PF Agris, FAP Vendeix, WD Graham - Journal of molecular biology, 2007 - Elsevier
The genetic code is degenerate, in that 20 amino acids are encoded by 61 triplet codes. In
1966, Francis Crick hypothesized that the cell's limited number of tRNAs decoded the …

[HTML][HTML] mRNA decoding in human is kinetically and structurally distinct from bacteria

M Holm, SK Natchiar, EJ Rundlet, AG Myasnikov… - Nature, 2023 - nature.com
In all species, ribosomes synthesize proteins by faithfully decoding messenger RNA (mRNA)
nucleotide sequences using aminoacyl-tRNA substrates. Current knowledge of the …

Stochastic mechano-chemical kinetics of molecular motors: a multidisciplinary enterprise from a physicist's perspective

D Chowdhury - Physics Reports, 2013 - Elsevier
A molecular motor is made of either a single macromolecule or a macromolecular complex.
Just like their macroscopic counterparts, molecular motors “transduce” input energy into …

Structure and dynamics of a processive Brownian motor: the translating ribosome

J Frank, RL Gonzalez Jr - Annual review of biochemistry, 2010 - annualreviews.org
There is mounting evidence indicating that protein synthesis is driven and regulated by
mechanisms that direct stochastic, large-scale conformational fluctuations of the …

Simulating movement of tRNA into the ribosome during decoding

KY Sanbonmatsu, S Joseph… - Proceedings of the …, 2005 - National Acad Sciences
Decoding is the key step during protein synthesis that enables information transfer from RNA
to protein, a process critical for the survival of all organisms. We have used large-scale …

Bringing order to translation: the contributions of transfer RNA anticodon‐domain modifications

PF Agris - EMBO reports, 2008 - embopress.org
The biosynthesis of RNA includes its post‐transcriptional modifications, and the crucial
functions of these modifications have supported their conservation within all three kingdoms …

Accommodation of aminoacyl-tRNA into the ribosome involves reversible excursions along multiple pathways

PC Whitford, P Geggier, RB Altman, SC Blanchard… - Rna, 2010 - rnajournal.cshlp.org
The ribosome is a massive ribonucleoprotein complex (∼ 2.4 MDa) that utilizes large-scale
structural fluctuations to produce unidirectional protein synthesis. Accommodation is a key …

Structure of transfer RNAs: similarity and variability

R Giegé, F Jühling, J Pütz, P Stadler… - Wiley …, 2012 - Wiley Online Library
Transfer RNAs (tRNAs) are ancient molecules whose origin goes back to the beginning of
life on Earth. Key partners in the ribosome‐translation machinery, tRNAs read genetic …

The process of mRNA–tRNA translocation

J Frank, H Gao, J Sengupta, N Gao… - Proceedings of the …, 2007 - National Acad Sciences
In the elongation cycle of translation, translocation is the process that advances the mRNA–
tRNA moiety on the ribosome, to allow the next codon to move into the decoding center …