Kinetic solvent effects in organic reactions

BL Slakman, RH West - Journal of Physical Organic Chemistry, 2019 - Wiley Online Library
This article reviews prior work studying reaction kinetics in solution, with the goal of using
this information to improve detailed kinetic modeling in the solvent phase. Both experimental …

Intramolecular and water mediated tautomerism of solvated glycine

P Zhang, AT Gardini, X Xu… - Journal of Chemical …, 2024 - ACS Publications
Understanding tautomerism and characterizing solvent effects on the dynamic processes
pose significant challenges. Using enhanced-sampling molecular dynamics based on state …

Glycine in aqueous solution: solvation shells, interfacial water, and vibrational spectroscopy from ab initio molecular dynamics

J Sun, D Bousquet, H Forbert, D Marx - The Journal of chemical …, 2010 - pubs.aip.org
An aqueous glycine solution is studied with ab initio molecular dynamics to investigate the
structural aspects of the different solvation shells within the zwitterion and their impact on the …

Recent progress in density functional methodology for biomolecular modeling

DR Salahub, A de La Lande, A Goursot… - Applications of density …, 2013 - Springer
Abstract Density Functional Theory (DFT) has become the workhorse of applied
computational chemistry. DFT has grown in a number of different directions depending on …

Modeling the initiation phase of the catalytic cycle in the glycyl-radical enzyme benzylsuccinate synthase

M Szaleniec, G Oleksy, A Sekuła, I Aleksić… - The Journal of …, 2024 - ACS Publications
The reaction of benzylsuccinate synthase, the radical-based addition of toluene to a
fumarate cosubstrate, is initiated by hydrogen transfer from a conserved cysteine to the …

Radical Stability—Thermochemical Aspects

J Hioe, H Zipse - … of Radicals in Chemistry, Biology and …, 2012 - Wiley Online Library
Reaction enthalpies for hydrogen transfer reactions provide a quantitative basis for the
definition of the stability of C‐, S‐, O‐, N‐, and B‐centered radicals. The radical stabilization …

Radicals in enzymatic catalysis—a thermodynamic perspective

J Hioe, H Zipse - Faraday Discussions, 2010 - pubs.rsc.org
The thermodynamic stability of radicals involved in enzymatic catalysis has been quantified
using a series of theoretical methods. It is found that three of the most often encountered …

An ab iniio study on the micro-solvation of amino acids: On the number of water molecules necessary to stabilize the zwitter ion

JK Gochhayat, A Dey, AK Pathak - Chemical Physics Letters, 2019 - Elsevier
Second order Møller–Plesset (MP2) perturbation theory with 6-311++ G (d, p) as well as aug-
cc-pvtz basis sets are applied to find the minimum number of water molecules necessary to …

Formation, isomerization, and dissociation of α-carbon-centered and π-centered glycylglycyltryptophan radical cations

DCM Ng, T Song, SO Siu, CK Siu… - The Journal of …, 2010 - ACS Publications
Gas phase fragmentations of two isomeric radical cationic tripeptides of
glycylglycyltryptophan[G• GW]+ and [GGW]•+ with well-defined initial radical sites at the α …

Arginine‐facilitated α‐and π‐radical migrations in glycylarginyltryptophan radical cations

T Song, DCM Ng, Q Quan, CK Siu… - Chemistry–An Asian …, 2011 - Wiley Online Library
We have used model tripeptides GXW (with X being one of the amino acid residues glycine
(G), alanine (A), leucine (L), phenylalanine (F), glutamic acid (E), histidine (H), lysine (K), or …