φ29 family of phages

WJJ Meijer, JA Horcajadas, M Salas - Microbiology and molecular …, 2001 - Am Soc Microbiol
Continuous research spanning more than three decades has made the Bacillus
bacteriophage φ29 a paradigm for several molecular mechanisms of general biological …

Repression of transcription initiation in bacteria

F Rojo - Journal of bacteriology, 1999 - Am Soc Microbiol
Bacteria live in habitats of frequently changing conditions and have evolved very
sophisticated responses to adapt to environmental changes. These responses most …

Design, construction and characterization of a set of insulated bacterial promoters

JH Davis, AJ Rubin, RT Sauer - Nucleic acids research, 2011 - academic.oup.com
We have generated a series of variable-strength, constitutive, bacterial promoters that act
predictably in different sequence contexts, span two orders of magnitude in strength and …

RNA polymerase and sigma factors

JD Helmann, CP Moran Jr - Bacillus subtilis and its Closest …, 2001 - Wiley Online Library
RNA polymerase (RNAP) acts at a critical juncture to link the genomic potential of an
organism to the expression of this potential as RNA, protein, and ultimately catalytic …

Mechanisms of transcriptional repression

F Rojo - Current opinion in microbiology, 2001 - Elsevier
Transcriptional repressors are usually viewed as proteins that bind to promoters in a way
that impedes subsequent binding of RNA polymerase. Although this repression mechanism …

Bacteriophage protein–protein interactions

R Häuser, S Blasche, T Dokland… - Advances in virus …, 2012 - Elsevier
Abstract Bacteriophages T7, λ, P22, and P2/P4 (from Escherichia coli), as well as ϕ29 (from
Bacillus subtilis), are among the best-studied bacterial viruses. This chapter summarizes …

[HTML][HTML] Plasmid rolling circle replication: identification of the RNA polymerase‐directed primer RNA and requirement for DNA polymerase I for lagging strand …

MG Kramer, SA Khan, M Espinosa - The EMBO journal, 1997 - embopress.org
Plasmid rolling circle replication involves generation of single‐stranded DNA (ssDNA)
intermediates. ssDNA released after leading strand synthesis is converted to a double …

Transcriptional Activation of the Bacillus subtilis ackA Gene Requires Sequences Upstream of the Promoter

AJ Turinsky, FJ Grundy, JH Kim… - Journal of …, 1998 - Am Soc Microbiol
Transcriptional activation of the Bacillus subtilis ackA gene, encoding acetate kinase, was
previously shown to require catabolite control protein A (CcpA) and sequences upstream of …

Transcription activation or repression by phage φ29 protein p4 depends on the strength of the RNA polymerase–promoter interactions

M Monsalve, B Calles, M Mencía, M Salas, F Rojo - Molecular cell, 1997 - cell.com
Phage Φ29 protein p4 activates the late A3 promoter and represses the early A2c promoter,
in both cases by binding upstream from RNA polymerase (RNAP) and interacting with the C …

Relevance of UP elements for three strong Bacillus subtilis phage ϕ29 promoters

WJJ Meijer, M Salas - Nucleic acids research, 2004 - academic.oup.com
Various Escherichia coli promoters contain, in addition to the classical–35 and–10
hexamers, a third recognition element, named the UP element. Located upstream of the–35 …