Plant pan-genomics and its applications

J Shi, Z Tian, J Lai, X Huang - Molecular Plant, 2023 - cell.com
Plant genomes are so highly diverse that a substantial proportion of genomic sequences are
not shared among individuals. The variable DNA sequences, along with the conserved core …

[HTML][HTML] Plant pan-genomics: recent advances, new challenges, and roads ahead

W Li, J Liu, H Zhang, Z Liu, Y Wang, L Xing… - Journal of Genetics and …, 2022 - Elsevier
Pan-genomics can encompass most of the genetic diversity of a species or population and
has proved to be a powerful tool for studying genomic evolution and the origin and …

Multi-omics revolution to promote plant breeding efficiency

U Mahmood, X Li, Y Fan, W Chang, Y Niu, J Li… - Frontiers in Plant …, 2022 - frontiersin.org
Crop production is the primary goal of agricultural activities, which is always taken into
consideration. However, global agricultural systems are coming under increasing pressure …

High-quality genome assembly and pan-genome studies facilitate genetic discovery in mung bean and its improvement

C Liu, Y Wang, J Peng, B Fan, D Xu, J Wu, Z Cao… - Plant …, 2022 - cell.com
Mung bean is an economically important legume crop species that is used as a food,
consumed as a vegetable, and used as an ingredient and even as a medicine. To explore …

Understandings and future challenges in soybean functional genomics and molecular breeding

H Du, C Fang, Y Li, F Kong, B Liu - Journal of Integrative Plant …, 2023 - Wiley Online Library
Soybean (Glycine max) is a major source of plant protein and oil. Soybean breeding has
benefited from advances in functional genomics. In particular, the release of soybean …

Exploring soybean resistance to soybean cyst nematode

AF Bent - Annual Review of Phytopathology, 2022 - annualreviews.org
Resistance to the soybean cyst nematode (SCN) is a topic incorporating multiple
mechanisms and multiple types of science. It is also a topic of substantial agricultural …

Exploring pan-genomes: an overview of resources and tools for unraveling structure, function, and evolution of crop genes and genomes

S Naithani, CH Deng, SK Sahu, P Jaiswal - Biomolecules, 2023 - mdpi.com
The availability of multiple sequenced genomes from a single species made it possible to
explore intra-and inter-specific genomic comparisons at higher resolution and build clade …

The effect of methodological considerations on the construction of gene-based plant pan-genomes

L Glick, I Mayrose - Genome Biology and Evolution, 2023 - academic.oup.com
Pan-genomics is an emerging approach for studying the genetic diversity within plant
populations. In contrast to common resequencing studies that compare whole genome …

A view of the pan‐genome of domesticated Cowpea (Vigna unguiculata [L.] Walp.)

Q Liang, M Muñoz‐Amatriaín, S Shu, S Lo… - The Plant …, 2024 - Wiley Online Library
Abstract Cowpea, Vigna unguiculata L. Walp., is a diploid warm‐season legume of critical
importance as both food and fodder in sub‐Saharan Africa. This species is also grown in …

Plant genome evolution in the genus Eucalyptus is driven by structural rearrangements that promote sequence divergence

S Ferguson, A Jones, K Murray, R Andrew… - Genome …, 2024 - genome.cshlp.org
Genomes have a highly organized architecture (nonrandom organization of functional and
nonfunctional genetic elements within chromosomes) that is essential for many biological …