vConTACT: an iVirus tool to classify double-stranded DNA viruses that infect Archaea and Bacteria

B Bolduc, HB Jang, G Doulcier, ZQ You, S Roux… - PeerJ, 2017 - peerj.com
Taxonomic classification of archaeal and bacterial viruses is challenging, yet also
fundamental for developing a predictive understanding of microbial ecosystems. Recent …

The intricate organizational strategy of nucleus-forming phages

A Prichard, J Pogliano - Current Opinion in Microbiology, 2024 - Elsevier
Nucleus-forming phages (chimalliviruses) encode numerous genes responsible for creating
intricate structures for viral replication. Research on this newly appreciated family of phages …

[HTML][HTML] Identifying the core genome of the nucleus-forming bacteriophage family and characterization of Erwinia phage RAY

A Prichard, J Lee, TG Laughlin, A Lee, KP Thomas… - Cell reports, 2023 - cell.com
We recently discovered that some bacteriophages establish a nucleus-like replication
compartment (phage nucleus), but the core genes that define nucleus-based phage …

Bacteriophage classification for assembled contigs using graph convolutional network

J Shang, J Jiang, Y Sun - Bioinformatics, 2021 - academic.oup.com
Motivation Bacteriophages (aka phages), which mainly infect bacteria, play key roles in the
biology of microbes. As the most abundant biological entities on the planet, the number of …

Characterization of Novel Bacteriophages for Biocontrol of Bacterial Blight in Leek Caused by Pseudomonas syringae pv. porri

S Rombouts, A Volckaert, S Venneman… - Frontiers in …, 2016 - frontiersin.org
Pseudomonas syringae pv. porri, the causative agent of bacterial blight in leek (Allium
porrum), is increasingly frequent causing problems in leek cultivation. Because of the current …

A proposed integrated approach for the preclinical evaluation of phage therapy in Pseudomonas infections

K Danis-Wlodarczyk, D Vandenheuvel, HB Jang… - Scientific reports, 2016 - nature.com
Bacteriophage therapy is currently resurging as a potential complement/alternative to
antibiotic treatment. However, preclinical evaluation lacks streamlined approaches. We here …

Characterization and Genomic Analysis of ValSw3-3, a New Siphoviridae Bacteriophage Infecting Vibrio alginolyticus

L Chen, Q Liu, J Fan, T Yan, H Zhang, J Yang… - Journal of …, 2020 - Am Soc Microbiol
ABSTRACT A novel lytic bacteriophage, ValSw3-3, which efficiently infects pathogenic
strains of Vibrio alginolyticus, was isolated from sewage water and characterized by …

Characterization of the Newly Isolated Lytic Bacteriophages KTN6 and KT28 and Their Efficacy against Pseudomonas aeruginosa Biofilm

K Danis-Wlodarczyk, T Olszak, M Arabski, S Wasik… - PloS one, 2015 - journals.plos.org
We here describe two novel lytic phages, KT28 and KTN6, infecting Pseudomonas
aeruginosa, isolated from a sewage sample from an irrigated field near Wroclaw, in Poland …

Efficiency of a bacteriophage in controlling vibrio infection in the juvenile sea cucumber Apostichopus japonicus

Z Li, J Zhang, X Li, X Wang, Z Cao, L Wang, Y Xu - Aquaculture, 2016 - Elsevier
Vibro cyclitrophicus is thought to be responsible for the cause of severe infection in juvenile
sea cucumber (Apostichopus japonicus). Increases in the prevalence of antibiotic resistant …

Integrative omics analysis of Pseudomonas aeruginosa virus PA5oct highlights the molecular complexity of jumbo phages

C Lood, K Danis‐Wlodarczyk… - Environmental …, 2020 - Wiley Online Library
Summary Pseudomonas virus vB_PaeM_PA5oct is proposed as a model jumbo
bacteriophage to investigate phage‐bacteria interactions and is a candidate for phage …