Isolation and cultivation of human gut microorganisms: A review

X Wan, Q Yang, X Wang, Y Bai, Z Liu - Microorganisms, 2023 - mdpi.com
Microbial resources from the human gut may find use in various applications, such as
empirical research on the microbiome, the development of probiotic products, and …

Gut microbial features and circulating metabolomic signatures of frailty in older adults

Y Pu, Z Sun, H Zhang, Q Huang, Z Wang, Z Mei… - Nature Aging, 2024 - nature.com
Frailty, a multidimensional indicator of suboptimal aging, reflects cumulative declines across
multiple physiological systems. Although age-related changes have been reported in gut …

Nanopore R10.4 metagenomic detection of blaCTX-M/blaDHA antimicrobial resistance genes and their genetic environments in stool

EI Campos-Madueno, C Aldeia, A Endimiani - Nature Communications, 2024 - nature.com
The increasing prevalence of gut colonization with CTX-M extended-spectrum β-lactamase-
and/or DHA plasmid-mediated AmpC-producing Escherichia coli is a concern. Here, we …

Factors influencing oral microbiome analysis: from saliva sampling methods to next-generation sequencing platforms

E Bang, S Oh, U Ju, HE Chang, JS Hong, HJ Baek… - Scientific Reports, 2023 - nature.com
The exploration of oral microbiome has been increasing due to its relatedness with various
systemic diseases, but standardization of saliva sampling for microbiome analysis has not …

Exploring the humification process of municipal sludge in hyperthermophilic composting through metagenomic and untargeted metabolomic

F Ma, Y Wang, H Quan, Z Wang, C Zhao, X Li… - Bioresource …, 2023 - Elsevier
Hyperthermophilic composting (HC) has been widely recognized for the advantage of high
treatment efficiency for organic wastes. However, the humification process is still unclear. In …

Comparative Metabolomics and Microbiome Analysis of Ethanol versus OMNImet/gene• GUT Fecal Stabilization

H Isokääntä, L Pinto da Silva, N Karu… - Analytical …, 2024 - ACS Publications
Metabolites from feces provide important insights into the functionality of the gut microbiome.
As immediate freezing is not always feasible in gut microbiome studies, there is a need for …

Fecal microbiota transplantation treatment of autoimmune-mediated type 1 diabetes: A systematic review

S Zhang, F Deng, J Chen, F Chen, Z Wu… - Frontiers in Cellular …, 2022 - frontiersin.org
There is a strong link between fecal microbiota and the development of type 1 diabetes. As
an emerging therapeutic modality, fecal microbiota transplantation has been shown to be …

Longitudinal profiles of the fecal metabolome during the first 2 years of life

EA Holzhausen, N Shen, B Chalifour, VL Tran, Z Li… - Scientific Reports, 2023 - nature.com
During the first 2 years of life, the infant gut microbiome is rapidly developing, and gut
bacteria may impact host health through the production of metabolites that can have …

Higher abundance of Campylobacter in the oral microbiome of Japanese patients with moyamoya disease

K Takayanagi, F Kanamori, K Ishii, K Yokoyama… - Scientific Reports, 2023 - nature.com
Genetic factors alone cannot explain the pathophysiology of moyamoya disease (MMD), and
environmental factors such as an immune response are thought to be involved. Oral and gut …

Detection of blaCTX-M and blaDHA genes in stool samples of healthy people: comparison of culture- and shotgun metagenomic-based approaches

EI Campos-Madueno, C Aldeia, V Perreten… - Frontiers in …, 2023 - frontiersin.org
We implemented culture-and shotgun metagenomic sequencing (SMS)-based methods to
assess the gut colonization with extended-spectrum cephalosporin-resistant …