Doubling down on genomes: polyploidy and crop plants

S Renny‐Byfield, JF Wendel - American journal of botany, 2014 - Wiley Online Library
Polyploidy, or whole genome multiplication, is ubiquitous among angiosperms. Many crop
species are relatively recent allopolyploids, resulting from interspecific hybridization and …

Gene balance hypothesis: connecting issues of dosage sensitivity across biological disciplines

JA Birchler, RA Veitia - … of the National Academy of Sciences, 2012 - National Acad Sciences
We summarize, in this review, the evidence that genomic balance influences gene
expression, quantitative traits, dosage compensation, aneuploid syndromes, population …

Origin and evolution of the octoploid strawberry genome

PP Edger, TJ Poorten, R VanBuren, MA Hardigan… - Nature …, 2019 - nature.com
Cultivated strawberry emerged from the hybridization of two wild octoploid species, both
descendants from the merger of four diploid progenitor species into a single nucleus more …

The multiple fates of gene duplications: deletion, hypofunctionalization, subfunctionalization, neofunctionalization, dosage balance constraints, and neutral variation

JA Birchler, H Yang - The Plant Cell, 2022 - academic.oup.com
Gene duplications have long been recognized as a contributor to the evolution of genes with
new functions. Multiple copies of genes can result from tandem duplication, from …

Insights into land plant evolution garnered from the Marchantia polymorpha genome

JL Bowman, T Kohchi, KT Yamato, J Jenkins, S Shu… - Cell, 2017 - cell.com
The evolution of land flora transformed the terrestrial environment. Land plants evolved from
an ancestral charophycean alga from which they inherited developmental, biochemical, and …

Heterosis

JA Birchler, H Yao, S Chudalayandi, D Vaiman… - The Plant …, 2010 - academic.oup.com
Heterosis refers to the phenomenon that progeny of diverse varieties of a species or crosses
between species exhibit greater biomass, speed of development, and fertility than both …

Bias in plant gene content following different sorts of duplication: tandem, whole-genome, segmental, or by transposition

M Freeling - Annual review of plant biology, 2009 - annualreviews.org
Each mode of gene duplication (tandem, tetraploid, segmental, transpositional) retains
genes in a biased manner. A reciprocal relationship exists between plant genes retained …

Genetic and epigenetic mechanisms for gene expression and phenotypic variation in plant polyploids

ZJ Chen - Annu. Rev. Plant Biol., 2007 - annualreviews.org
Polyploidy, or whole-genome duplication (WGD), is an important genomic feature for all
eukaryotes, especially many plants and some animals. The common occurrence of …

The evolution of sex-biased genes and sex-biased gene expression

H Ellegren, J Parsch - Nature Reviews Genetics, 2007 - nature.com
Differences between males and females in the optimal phenotype that is favoured by
selection can be resolved by the evolution of differential gene expression in the two sexes …

Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution

G Blanc, KH Wolfe - The Plant Cell, 2004 - academic.oup.com
To study the evolutionary effects of polyploidy on plant gene functions, we analyzed
functional genomics data for a large number of duplicated gene pairs formed by ancient …