The mechanism of peptidyl transfer catalysis by the ribosome

EKY Leung, N Suslov, N Tuttle… - Annual review of …, 2011 - annualreviews.org
The ribosome catalyzes two fundamental biological reactions: peptidyl transfer, the
formation of a peptide bond during protein synthesis, and peptidyl hydrolysis, the release of …

Thermodynamic Overview of Bioconjugation Reactions Pertinent to Lysine and Cysteine Peptide and Protein Residues

M Lopandic, F Merza, JF Honek - Compounds, 2023 - mdpi.com
Bioconjugation reactions are critical to the modification of peptides and proteins, permitting
the introduction of biophysical probes onto proteins as well as drugs for use in antibody …

Microsolvated transition state models for improved insight into chemical properties and reaction mechanisms

RB Sunoj, M Anand - Physical chemistry chemical physics, 2012 - pubs.rsc.org
Over the years, several methods have been developed to effectively represent the chemical
behavior of solutes in solvents. The environmental effects arising due to solvation can …

Aminolysis of X-substituted phenyl diphenylphosphinates: Effect of amine nature on reactivity and transition-state structure

IH Um, JY Han, YH Shin - The Journal of Organic Chemistry, 2009 - ACS Publications
A kinetic study is reported for aminolysis of X-substituted phenyl diphenylphosphinates (1a−
i) in 80 mol% H2O/20 mol% dimethyl sulfoxide at 25.0±0.1° C. The Brønsted-type plot for the …

Concerted amidation of activated esters: reaction path and origins of selectivity in the kinetic resolution of cyclic amines via N-heterocyclic carbenes and hydroxamic …

SE Allen, SY Hsieh, O Gutierrez, JW Bode… - Journal of the …, 2014 - ACS Publications
The N-heterocyclic carbene and hydroxamic acid cocatalyzed kinetic resolution of cyclic
amines generates enantioenriched amines and amides with selectivity factors up to 127. In …

DFT Calculations on the Role of Base in the Reaction between CO2 and Monoethanolamine

JG Shim, JH Kim, YH Jhon, J Kim… - Industrial & engineering …, 2009 - ACS Publications
DFT calculations using a PCM solvation model were carried out to examine the reaction
pathways for the formation of carbamate from CO2 and monoethanolamine (MEA) in the …

Predicting reactivities of organic molecules. Theoretical and experimental studies on the aminolysis of phenyl acetates

B Galabov, S Ilieva, B Hadjieva… - The Journal of …, 2008 - ACS Publications
The quality of reactivity predictions coming from alternative theoretical approaches as well
as experimental reactivity constants is examined in the case of the ester aminolysis process …

Mechanistic Assessment of SNAr Displacement of Halides from 1-Halo-2,4-dinitrobenzenes by Selected Primary and Secondary Amines: Brønsted and Mayr …

IH Um, LR Im, JS Kang, SS Bursey… - The Journal of Organic …, 2012 - ACS Publications
Pseudo-first-order rate constants (k obsd) have been measured spectrophotometrically for
nucleophilic substitution reactions of 1-X-2, 4-dinitrobenzenes (1a–d, X= F, Cl, Br, I) with …

Aminolysis of Y-Substituted-phenyl 2-Methoxybenzoates in Acetonitrile: Effect of the o-Methoxy Group on Reactivity and Reaction Mechanism

IH Um, AR Bae - The Journal of Organic Chemistry, 2011 - ACS Publications
Second-order rate constants (k N) were measured for aminolyses of Y-substituted-phenyl 2-
methoxybenzoates 2a–i and 4-nitrophenyl X-substituted-benzoates 3a–j in MeCN at 25.0° …

Electronic nature of substituent X governs reaction mechanism in aminolysis of 4-pyridyl X-substituted-benzoates in acetonitrile

IH Um, AR Bae - The Journal of Organic Chemistry, 2012 - ACS Publications
A kinetic study is reported for aminolysis of 4-pyridyl X-substituted-benzoates 5a–i. Plots of
pseudo-first-order rate constants (k obsd) vs [amine] curve upward for the reactions of …