The sound of silence: Transgene silencing in mammalian cell engineering

A Cabrera, HI Edelstein, F Glykofrydis, KS Love… - Cell Systems, 2022 - cell.com
To elucidate principles operating in native biological systems and to develop novel
biotechnologies, synthetic biology aims to build and integrate synthetic gene circuits within …

Synthetic gene circuits as tools for drug discovery

AM Beitz, CG Oakes, KE Galloway - Trends in Biotechnology, 2022 - cell.com
Within mammalian systems, there exists enormous opportunity to use synthetic gene circuits
to enhance phenotype-based drug discovery, to map the molecular origins of disease, and …

Evaluation of the determinants for improved pluripotency induction and maintenance by engineered SOX17

H Hu, DHH Ho, DS Tan, CM MacCarthy… - Nucleic Acids …, 2023 - academic.oup.com
An engineered SOX17 variant with point mutations within its DNA binding domain termed
SOX17FNV is a more potent pluripotency inducer than SOX2, yet the underlying mechanism …

Yeast cell segmentation in microstructured environments with deep learning

T Prangemeier, C Wildner, AO Françani, C Reich… - Biosystems, 2022 - Elsevier
Cell segmentation is a major bottleneck in extracting quantitative single-cell information from
microscopy data. The challenge is exasperated in the setting of microstructured …

Understanding and engineering chromatin as a dynamical system across length and timescales

CP Johnstone, NB Wang, SA Sevier, KE Galloway - Cell Systems, 2020 - cell.com
Connecting the molecular structure and function of chromatin across length and timescales
remains a grand challenge to understanding and engineering cellular behaviors. Across five …

Design and development of engineered receptors for cell and tissue engineering

SB Javdan, TL Deans - Current opinion in systems biology, 2021 - Elsevier
Advances in synthetic biology have provided genetic tools to reprogram cells to obtain a
variety of desired cellular functions. These include tools to enable the customization of cells …

Integrating bioelectronics with cell-based synthetic biology

J Rivnay, R Raman, JT Robinson, C Schreib… - Nature Reviews …, 2025 - nature.com
Biohybrid devices based on engineered cells interfaced with bioelectronics represent a
promising union where the strengths of each field can be synergistically combined, resulting …

Accelerating Diverse Cell-Based Therapies Through Scalable Design

EL Peterman, D Ploessl… - Annual Review of …, 2024 - annualreviews.org
Augmenting cells with novel, genetically encoded functions will support therapies that
expand beyond natural capacity for immune surveillance and tissue regeneration. However …

Multi-stylegan: Towards image-based simulation of time-lapse live-cell microscopy

C Reich, T Prangemeier, C Wildner… - Medical Image Computing …, 2021 - Springer
Time-lapse fluorescent microscopy (TLFM) combined with predictive mathematical
modelling is a powerful tool to study the inherently dynamic processes of life on the single …

Single cell biology—a Keystone Symposia report

J Cable, MB Elowitz, AI Domingos… - Annals of the New …, 2021 - Wiley Online Library
Single cell biology has the potential to elucidate many critical biological processes and
diseases, from development and regeneration to cancer. Single cell analyses are …