Chromosomics: Bridging the gap between genomes and chromosomes

JE Deakin, S Potter, R O'Neill, A Ruiz-Herrera… - Genes, 2019 - mdpi.com
The recent advances in DNA sequencing technology are enabling a rapid increase in the
number of genomes being sequenced. However, many fundamental questions in genome …

Bridging the gap between vertebrate cytogenetics and genomics with single-chromosome sequencing (ChromSeq)

A Iannucci, AI Makunin, AP Lisachov, C Ciofi… - Genes, 2021 - mdpi.com
The study of vertebrate genome evolution is currently facing a revolution, brought about by
next generation sequencing technologies that allow researchers to produce nearly complete …

Initial characterization of the large genome of the salamander Ambystoma mexicanum using shotgun and laser capture chromosome sequencing

MC Keinath, VA Timoshevskiy, NY Timoshevskaya… - Scientific reports, 2015 - nature.com
Vertebrates exhibit substantial diversity in genome size and some of the largest genomes
exist in species that uniquely inform diverse areas of basic and biomedical research. For …

Coexistence of Y, W, and Z sex chromosomes in Xenopus tropicalis

ÁS Roco, AW Olmstead, SJ Degitz… - Proceedings of the …, 2015 - National Acad Sciences
Homomorphic sex chromosomes and rapid turnover of sex-determining genes can
complicate establishing the sex chromosome system operating in a given species. This …

Divergent subgenome evolution in the allotetraploid frog Xenopus calcaratus

M Knytl, NR Fornaini, B Bergelová, V Gvoždík… - Gene, 2023 - Elsevier
Allopolyploid genomes are divided into compartments called subgenomes that are derived
from lower ploidy ancestors. In African clawed frogs of the subgenus Xenopus (genus …

Shining Light in Mechanobiology: Optical Tweezers, Scissors, and Beyond

AB Stilgoe, IA Favre-Bulle, ML Watson… - ACS …, 2024 - ACS Publications
Mechanobiology helps us to decipher cell and tissue functions by looking at changes in their
mechanical properties that contribute to development, cell differentiation, physiology, and …

Genomic tackling of human satellite DNA: breaking barriers through time

M Lopes, S Louzada, M Gama-Carvalho… - International Journal of …, 2021 - mdpi.com
(Peri) centromeric repetitive sequences and, more specifically, satellite DNA (satDNA)
sequences, constitute a major human genomic component. SatDNA sequences can vary on …

Mapping of single-copy genes by TSA-FISH in the codling moth, Cydia pomonella

LZ Carabajal Paladino, P Nguyen, J Šíchová, F Marec - BMC genetics, 2014 - Springer
Background We work on the development of transgenic sexing strains in the codling moth,
Cydia pomonella (Tortricidae), which would enable to produce male-only progeny for the …

Chromosome divergence during evolution of the tetraploid clawed frogs, Xenopus mellotropicalis and Xenopus epitropicalis as revealed by Zoo-FISH

M Knytl, O Smolík, S Kubíčková, T Tlapáková… - PLoS …, 2017 - journals.plos.org
Whole genome duplication (WGD) generates new species and genomic redundancy. In
African clawed frogs of the genus Xenopus, this phenomenon has been especially important …

Low-pass single-chromosome sequencing of human small supernumerary marker chromosomes (sSMCs) and Apodemus B chromosomes

AI Makunin, M Rajičić, TV Karamysheva… - Chromosoma, 2018 - Springer
Supernumerary chromosomes sporadically arise in many eukaryotic species as a result of
genomic rearrangements. If present in a substantial part of species population, those are …