Emerging themes in CryoEM─ Single particle analysis image processing

JL Vilas, JM Carazo, COS Sorzano - Chemical Reviews, 2022 - ACS Publications
Cryo-electron microscopy (CryoEM) has become a vital technique in structural biology. It is
an interdisciplinary field that takes advantage of advances in biochemistry, physics, and …

Survey of the analysis of continuous conformational variability of biological macromolecules by electron microscopy

COS Sorzano, A Jiménez, J Mota, JL Vilas… - … Section F: Structural …, 2019 - journals.iucr.org
Single-particle analysis by electron microscopy is a well established technique for analyzing
the three-dimensional structures of biological macromolecules. Besides its ability to produce …

Continuous flexibility analysis of SARS-CoV-2 spike prefusion structures

R Melero, COS Sorzano, B Foster, JL Vilas, M Martínez… - IUCrJ, 2020 - journals.iucr.org
Using a new consensus-based image-processing approach together with principal
component analysis, the flexibility and conformational dynamics of the SARS-CoV-2 spike in …

[PDF][PDF] Approximating deformation fields for the analysis of continuous heterogeneity of biological macromolecules by 3D Zernike polynomials

D Herreros, RR Lederman, J Krieger… - IUCrJ, 2021 - journals.iucr.org
Structural biology has evolved greatly due to the advances introduced in fields like electron
microscopy. This image-capturing technique, combined with improved algorithms and …

Advances in xmipp for cryo–electron microscopy: From xmipp to scipion

D Strelak, A Jiménez-Moreno, JL Vilas… - Molecules, 2021 - mdpi.com
Xmipp is an open-source software package consisting of multiple programs for processing
data originating from electron microscopy and electron tomography, designed and managed …

An atypical BRCT–BRCT interaction with the XRCC1 scaffold protein compacts human DNA ligase IIIα within a flexible DNA repair complex

M Hammel, I Rashid, A Sverzhinsky… - Nucleic acids …, 2021 - academic.oup.com
Abstract The XRCC1–DNA ligase IIIα complex (XL) is critical for DNA single-strand break
repair, a key target for PARP inhibitors in cancer cells deficient in homologous …

Scipion-EM-ProDy: A Graphical Interface for the ProDy Python Package within the Scipion Workflow Engine Enabling Integration of Databases, Simulations and Cryo …

JM Krieger, COS Sorzano, JM Carazo - International Journal of Molecular …, 2023 - mdpi.com
Macromolecular assemblies, such as protein complexes, undergo continuous structural
dynamics, including global reconfigurations critical for their function. Two fast analytical …

[PDF][PDF] Scipion Flexibility Hub: an integrative framework for advanced analysis of conformational heterogeneity in cryoEM

D Herreros, JM Krieger, Y Fonseca… - … Section D: Structural …, 2023 - journals.iucr.org
Understanding how structure and function meet to drive biological processes is
progressively shifting the cryoEM field towards a more advanced analysis of …

[PDF][PDF] Survey of the analysis of continuous conformational variability of biological macromolecules by electron microscopy

JK Freyberg, I Bahar, R Marabini, JM Carazo - 2019 - i2pc.es
Single-particle analysis by electron microscopy is a well established technique for analyzing
the three-dimensional structures of biological macromolecules. Besides its ability to produce …