Tissue clearing and its applications in neuroscience

HR Ueda, A Ertürk, K Chung, V Gradinaru… - Nature Reviews …, 2020 - nature.com
State-of-the-art tissue-clearing methods provide subcellular-level optical access to intact
tissues from individual organs and even to some entire mammals. When combined with light …

Statistical inference on random dot product graphs: a survey

A Athreya, DE Fishkind, M Tang, CE Priebe… - Journal of Machine …, 2018 - jmlr.org
The random dot product graph (RDPG) is an independent-edge random graph that is
analytically tractable and, simultaneously, either encompasses or can successfully …

Neuronal wiring diagram of an adult brain

S Dorkenwald, A Matsliah, AR Sterling, P Schlegel… - Nature, 2024 - nature.com
Connections between neurons can be mapped by acquiring and analysing electron
microscopic brain images. In recent years, this approach has been applied to chunks of …

The connectome of an insect brain

M Winding, BD Pedigo, CL Barnes, HG Patsolic, Y Park… - Science, 2023 - science.org
Brains contain networks of interconnected neurons and so knowing the network architecture
is essential for understanding brain function. We therefore mapped the synaptic-resolution …

Whole-brain annotation and multi-connectome cell typing of Drosophila

P Schlegel, Y Yin, AS Bates, S Dorkenwald, K Eichler… - Nature, 2024 - nature.com
The fruit fly Drosophila melanogaster has emerged as a key model organism in
neuroscience, in large part due to the concentration of collaboratively generated molecular …

FlyWire: online community for whole-brain connectomics

S Dorkenwald, CE McKellar, T Macrina, N Kemnitz… - Nature …, 2022 - nature.com
Due to advances in automated image acquisition and analysis, whole-brain connectomes
with 100,000 or more neurons are on the horizon. Proofreading of whole-brain automated …

A complete electron microscopy volume of the brain of adult Drosophila melanogaster

Z Zheng, JS Lauritzen, E Perlman, CG Robinson… - Cell, 2018 - cell.com
Drosophila melanogaster has a rich repertoire of innate and learned behaviors. Its 100,000-
neuron brain is a large but tractable target for comprehensive neural circuit mapping. Only …

The complete connectome of a learning and memory centre in an insect brain

K Eichler, F Li, A Litwin-Kumar, Y Park, I Andrade… - Nature, 2017 - nature.com
Associating stimuli with positive or negative reinforcement is essential for survival, but a
complete wiring diagram of a higher-order circuit supporting associative memory has not …

Connectomic reconstruction of a female Drosophila ventral nerve cord

A Azevedo, E Lesser, JS Phelps, B Mark, L Elabbady… - Nature, 2024 - nature.com
A deep understanding of how the brain controls behaviour requires mapping neural circuits
down to the muscles that they control. Here, we apply automated tools to segment neurons …

Dense connectomic reconstruction in layer 4 of the somatosensory cortex

A Motta, M Berning, KM Boergens, B Staffler, M Beining… - Science, 2019 - science.org
INTRODUCTION The brain of mammals consists of an enormously dense network of
neuronal wires: the axons and dendrites of nerve cells. Their packing density is so high that …