The use of next generation sequencing for improving food safety: Translation into practice

B Jagadeesan, P Gerner-Smidt, MW Allard, S Leuillet… - Food …, 2019 - Elsevier
Abstract Next Generation Sequencing (NGS) combined with powerful bioinformatic
approaches are revolutionising food microbiology. Whole genome sequencing (WGS) of …

Use of whole-genome sequencing for food safety and public health in the United States

E Brown, U Dessai, S McGarry… - … pathogens and disease, 2019 - liebertpub.com
Whole-genome sequencing (WGS) is increasingly used by food regulatory and public health
agencies in the United States to facilitate the detection, investigation, and control of …

[HTML][HTML] Next generation microbiological risk assessment meta-omics: the next need for integration

L Cocolin, M Mataragas, F Bourdichon… - International Journal of …, 2018 - Elsevier
The development of a multi-omics approach has provided a new approach to the
investigation of microbial communities allowing an integration of data, which can be used to …

A Review of Temperature, pH, and Other Factors that Influence the Survival of Salmonella in Mayonnaise and Other Raw Egg Products

TP Keerthirathne, K Ross, H Fallowfield, H Whiley - Pathogens, 2016 - mdpi.com
Salmonellosis is one of the main causes of foodborne illnesses worldwide, with outbreaks
predominately linked to contamination of eggs and raw egg products, such as mayonnaise …

Listeria monocytogenes in the retail deli environment: A review

E Forauer, ST Wu, AJ Etter - Food Control, 2021 - Elsevier
Listeria monocytogenes has long been associated with ready-to-eat foods, particularly with
deli products. A retail deli is full of potential niches for L. monocytogenes to establish, and …

Strain-Level Discrimination of Shiga Toxin-Producing Escherichia coli in Spinach Using Metagenomic Sequencing

SR Leonard, MK Mammel, DW Lacher, CA Elkins - PloS one, 2016 - journals.plos.org
Consumption of fresh bagged spinach contaminated with Shiga toxin-producing Escherichia
coli (STEC) has led to severe illness and death; however current culture-based methods to …

Polyphyletic Nature of Salmonella enterica Serotype Derby and Lineage-Specific Host-Association Revealed by Genome-Wide Analysis

Y Sévellec, ML Vignaud, SA Granier, R Lailler… - Frontiers in …, 2018 - frontiersin.org
In France, Salmonella Derby is one of the most prevalent serotypes in pork and poultry meat.
Since 2006, it has ranked among the 10 most frequent Salmonella serotypes isolated in …

A Validation Approach of an End-to-End Whole Genome Sequencing Workflow for Source Tracking of Listeria monocytogenes and Salmonella enterica

AC Portmann, C Fournier, J Gimonet… - Frontiers in …, 2018 - frontiersin.org
Whole genome sequencing (WGS), using high throughput sequencing technology, reveals
the complete sequence of the bacterial genome in a few days. WGS is increasingly being …

Status and potential of bacterial genomics for public health practice: a scoping review

N Van Goethem, T Descamps… - Implementation …, 2019 - Springer
Background Next-generation sequencing (NGS) is increasingly being translated into routine
public health practice, affecting the surveillance and control of many pathogens. The …

Immuno- and nucleic acid-based current technique for Salmonella detection in food

L Lin, Q Zheng, J Lin, HG Yuk, L Guo - European Food Research and …, 2020 - Springer
Salmonella is a major cause of foodborne illness throughout the world and has resulted in a
serious of public health issues over the past decades. The conventional culture methods for …