The importance of tracking “missing” metabolites: how and why?

S Wang, TE Ballard, LJ Christopher… - Journal of Medicinal …, 2023 - ACS Publications
Technologies currently employed to find and identify drug metabolites in complex biological
matrices generally yield results that offer a comprehensive picture of the drug metabolite …

Artificial intelligence, machine learning, and deep learning in real-life drug design cases

C Muller, O Rabal, C Diaz Gonzalez - Artificial intelligence in drug design, 2022 - Springer
The discovery and development of drugs is a long and expensive process with a high
attrition rate. Computational drug discovery contributes to ligand discovery and optimization …

[HTML][HTML] Machine learning for metabolomics research in drug discovery

DD Martinelli - Intelligence-Based Medicine, 2023 - Elsevier
In a pharmaceutical context, metabolomics is an underexplored area of research.
Nevertheless, its utility in clinical pathology, biomarker discovery, metabolic subtyping, and …

Active Learning Approach for Guiding Site-of-Metabolism Measurement and Annotation

Y Chen, T Seidel, RA Jacob, S Hirte… - Journal of Chemical …, 2024 - ACS Publications
The ability to determine and predict metabolically labile atom positions in a molecule (also
called “sites of metabolism” or “SoMs”) is of high interest to the design and optimization of …

NICEdrug. ch, a workflow for rational drug design and systems-level analysis of drug metabolism

H MohammadiPeyhani, A Chiappino-Pepe, K Haddadi… - Elife, 2021 - elifesciences.org
The discovery of a drug requires over a decade of intensive research and financial
investments–and still has a high risk of failure. To reduce this burden, we developed the …

MetaTox 2.0: Estimating the Biological Activity Spectra of Drug-like Compounds Taking into Account Probable Biotransformations

AV Rudik, AV Dmitriev, AA Lagunin, DA Filimonov… - ACS …, 2023 - ACS Publications
After the biotransformation of xenobiotics in the human body, the biological activity of the
metabolites may differ from the activity of parent compounds. Therefore, to assess the overall …

Message Passing Neural Networks Improve Prediction of Metabolite Authenticity

NR Flynn, SJ Swamidass - Journal of chemical information and …, 2023 - ACS Publications
Cytochrome P450 enzymes aid in the elimination of a preponderance of small molecule
drugs, but can generate reactive metabolites that may adversely react with protein and DNA …

Metabolic forest: predicting the diverse structures of drug metabolites

TB Hughes, NL Dang, A Kumar, NR Flynn… - Journal of chemical …, 2020 - ACS Publications
Adverse drug metabolism often severely impacts patient morbidity and mortality.
Unfortunately, drug metabolism experimental assays are costly, inefficient, and slow …

Metaclass, a comprehensive classification system for predicting the occurrence of metabolic reactions based on the metaqsar database

A Mazzolari, A Scaccabarozzi, G Vistoli, A Pedretti - Molecules, 2021 - mdpi.com
(1) Background: Machine learning algorithms are finding fruitful applications in predicting
the ADME profile of new molecules, with a particular focus on metabolism predictions …

Extraction of data on parent compounds and their metabolites from texts of scientific abstracts

OA Tarasova, NY Biziukova, AV Rudik… - Journal of Chemical …, 2021 - ACS Publications
The growing amount of experimental data on chemical objects includes properties of small
molecules, results of studies of their interaction with human and animal proteins, and …