Predicting drug metabolism: experiment and/or computation?

J Kirchmair, AH Göller, D Lang, J Kunze… - Nature reviews Drug …, 2015 - nature.com
Drug metabolism can produce metabolites with physicochemical and pharmacological
properties that differ substantially from those of the parent drug, and consequently has …

[HTML][HTML] The food metabolome: a window over dietary exposure

A Scalbert, L Brennan, C Manach… - The American journal of …, 2014 - Elsevier
The food metabolome is defined as the part of the human metabolome directly derived from
the digestion and biotransformation of foods and their constituents. With> 25,000 …

A look at the importance of chirality in drug activity: Some significative examples

J Ceramella, D Iacopetta, A Franchini, M De Luca… - Applied Sciences, 2022 - mdpi.com
Chirality plays an important role in the development of many pharmaceuticals, being a
general property of 'handedness'; nevertheless, a large number of pharmaceuticals are still …

GLORYx: prediction of the metabolites resulting from phase 1 and phase 2 biotransformations of xenobiotics

C de Bruyn Kops, M Šícho, A Mazzolari… - Chemical research in …, 2020 - ACS Publications
Predicting the structures of metabolites formed in humans can provide advantageous
insights for the development of drugs and other compounds. Here we present GLORYx …

Computational methods and tools to predict cytochrome P450 metabolism for drug discovery

JD Tyzack, J Kirchmair - Chemical biology & drug design, 2019 - Wiley Online Library
In this review, we present important, recent developments in the computational prediction of
cytochrome P450 (CYP) metabolism in the context of drug discovery. We discuss in silico …

液滴微流控技术在微生物工程菌株选育中的应用进展

涂然, 李世新, 李昊霓, 王猛 - 合成生物学, 2023 - synbioj.cip.com.cn
微生物工程菌株是生物制造的重要基础, 但大多数的工程菌株需要进化改造才能适用于生物制造
. 在菌种选育过程中, 如何高效地筛选获得具有目标性状的微生物工程菌株是进行生物制造应用 …

[HTML][HTML] A comprehensive review on the analytical method, occurrence, transformation and toxicity of a reactive pollutant: BADGE

D Wang, H Zhao, X Fei, SA Synder, M Fang… - Environment International, 2021 - Elsevier
Bisphenol A diglycidyl ether (BADGE)-based epoxy resin is one of the most widely used
epoxy resins with an annual production amount of several million tons. Compared with all …

FAME 2: simple and effective machine learning model of cytochrome P450 regioselectivity

M Šícho, C de Bruyn Kops, C Stork… - Journal of chemical …, 2017 - ACS Publications
We report on the further development of FAst MEtabolizer (FAME; J. Chem. Inf. Model. 2013,
53, 2896–2907), a collection of random forest models for the prediction of sites of …

In silico pharmacology: Drug membrane partitioning and crossing

F Di Meo, G Fabre, K Berka, T Ossman… - Pharmacological …, 2016 - Elsevier
Over the past decade, molecular dynamics (MD) simulations have become particularly
powerful to rationalize drug insertion and partitioning in lipid bilayers. MD simulations …

Exploring metabolic pathways of Anamorelin, a selective agonist of the growth hormone Secretagogue receptor, via molecular networking

YB Kwak, JI Seo, HH Yoo - Pharmaceutics, 2023 - mdpi.com
In this study, we delineated the poorly characterized metabolism of anamorelin, a growth
hormone secretagogue receptor agonist, in vitro using human liver microsomes (HLM) …