Predicting gene regulatory interactions based on spatial gene expression data and deep learning

Y Yang, Q Fang, HB Shen - PLoS computational biology, 2019 - journals.plos.org
Reverse engineering of gene regulatory networks (GRNs) is a central task in systems
biology. Most of the existing methods for GRN inference rely on gene co-expression analysis …

ImPLoc: a multi-instance deep learning model for the prediction of protein subcellular localization based on immunohistochemistry images

W Long, Y Yang, HB Shen - Bioinformatics, 2020 - academic.oup.com
Motivation The tissue atlas of the human protein atlas (HPA) houses immunohistochemistry
(IHC) images visualizing the protein distribution from the tissue level down to the cell level …

HAMIL: Hierarchical aggregation-based multi-instance learning for microscopy image classification

Y Yang, Y Tu, H Lei, W Long - Pattern Recognition, 2023 - Elsevier
Multi-instance learning is common for computer vision tasks, especially in biomedical image
processing. Traditional methods for multi-instance learning focus on designing feature …

GraphLoc: a graph neural network model for predicting protein subcellular localization from immunohistochemistry images

JX Hu, Y Yang, YY Xu, HB Shen - Bioinformatics, 2022 - academic.oup.com
Motivation Recognition of protein subcellular distribution patterns and identification of
location biomarker proteins in cancer tissues are important for understanding protein …

MIGGRI: A multi-instance graph neural network model for inferring gene regulatory networks for Drosophila from spatial expression images

Y Huang, G Yu, Y Yang - PLOS Computational Biology, 2023 - journals.plos.org
Recent breakthrough in spatial transcriptomics has brought great opportunities for exploring
gene regulatory networks (GRNs) from a brand-new perspective. Especially, the local …

Multi-marginal contrastive learning for multi-label subcellular protein localization

Z Liu, Z Wang, B Du - … of the IEEE/CVF Conference on …, 2022 - openaccess.thecvf.com
Protein subcellular localization (PSL) is an important task to study human cell functions and
cancer pathogenesis. It has attracted great attention in the computer vision community …

空战目标轨迹预测技术研究综述.

郭正玉, 刘浩宇, 苏雨 - Aero Weaponry, 2024 - search.ebscohost.com
约翰· 波伊德提出的OODA 理论[1r2](Or 观察, Or 判断, Dr 决策, Ar 行动) 被用于对空战中的战斗
流程进行基本描述. 随着现代空战场中的信息不断丰富, 传输速率不断提高, 传输节点不断增多 …

Hamil: Hierarchical aggregation-based multi-instance learning for microscopy image classification

Y Tu, H Lei, W Long, Y Yang - arXiv preprint arXiv:2103.09764, 2021 - arxiv.org
Multi-instance learning is common for computer vision tasks, especially in biomedical image
processing. Traditional methods for multi-instance learning focus on designing feature …

[PDF][PDF] CSI 5180. Topics in Artificial Intelligence

M Turcotte - 2019 - eiti.uottawa.ca
At the fall 2019, I will be lecturing the first edition of Machine Learning for Bioinformatics
Applications. Its emphasis will primarily be on the analysis of complex biological data using …