Hardware accelerators are becoming increasingly commonplace in delivering high
performance computing solutions at a fraction of the cost of conventional supercomputers …

The capacity of on-chip trace buffers employed for embedded logic analysis limits the
observation window of a debug experiment. To increase the debug observation window, we …

This paper explores the pros and cons of reconfigurable computing in the form of FPGAs for
high performance efficient computing. In particular, the paper presents the results of a …

In the last years, advances in next-generation sequencing technologies have enabled the
proliferation of genomic applications that guide personalized medicine. These applications …

The longest common consecutive subsequences (LCCS) play a vital role in revealing the
biological relationships between DNA/RNA sequences especially the newly discovered …

Utilizing the nonuniform latencies of SDRAM devices, access reordering mechanisms alter
the sequence of main memory access streams to reduce the observed access latency. Using …

In the last years, advances in genome sequencing technologies have enabled the
proliferation of genomic applications that guide personalized medicine. These applications …

Motivation Pairwise sequence alignment is a very time-consuming step in common
bioinformatics pipelines. Speeding up this step requires heuristics, efficient implementations …

Abstract The Smith–Waterman (SW) algorithm based on dynamic programming is a well-
known classical method for high precision sequence matching and has become the gold …

Metagenomic gene classifications are significant in bioinformatics and computational
biology research. There are huge interrelated datasets that deal with human characteristics …